Mitchell's Water Monitor, Reference genome, PacBio-HiFi, blood
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until June 26, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-06-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| analysis_software | SMRTLink 25.1.0.257715 |
| ancillary_notes | none |
| associated_media | none |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1800/20250613_TSI_BRF_m84118_250613_015828_s4/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_D01 |
| certainty | certain |
| class | Reptilia |
| collection_date | 2025-04-29 |
| collection_method | hand caught |
| collector | Ian Brennan, Alana de Laive |
| collector_sample_id | Vmi1 |
| common_name | Mitchell's Water Monitor |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Ian Brennan |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629193 |
| date_of_transfer | 2025-06-26 |
| date_of_transfer_to_archive | 2025-06-26 |
| death_date | 2025-05-01 |
| facility_project_code | NA |
| facility_sample_id | 948-2 |
| family | Varanidae |
| file_type | bam |
| flowcell_id | m84118_250613_015828_s4 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250613_TSI_BRF_m84118_250613_015828_s4 |
| genus | Varanus |
| habitat | rocks behind beach along walking path |
| health_state | healthy, gravid |
| insert_size_range | 17938.0 |
| institution_name | Museum and Art Gallery of the Northern Territory |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/704792 |
| library_index_id_dual | bc2048 |
| library_index_seq_dual | TGATGCTAGTGAGTAT |
| library_location | BRF labs |
| library_ng_ul | 24.6 |
| library_prep_date | 2025-06-05 |
| library_prepared_by | Xiangning Liu |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| lifestage | adult organism |
| location_text | Nightcliff Shoreline |
| material_extracted_by | Ian Brennan |
| material_extraction_date | 2025-05-01 |
| material_extraction_method | PacBio PanDNA NanoBind Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | internal examination, eggs present |
| movie_length | 30.0 |
| n_libraries_pooled | 2.0 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | none |
| sample_custodian | Kirsti Abbott |
| sample_id | 102.100.100/668923 |
| sample_quality | collected fresh April 2025 |
| sample_type | whole organism |
| scientific_name | Varanus mitchelli |
| scientific_name_authorship | Mertens, 1958 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| source_population | Darwin, NT, Australia |
| species | mitchelli |
| specimen_id | MAGNT R39801 |
| specimen_id_description | Museum and Art Gallery of the Northern Territory voucher number |
| state_or_region | Northern Territory |
| taxon_id | 62045.0 |
| taxonomic_group | reptile |
| ticket | BPAOPS-1800 |
| tissue_collection | MAGNT R |
| tissue_collection_type | museum |
| tissue_number | MAGNT_R39801_Blood_Vmitchelli |
| tissue_preservation | liquid nitrogen then -80C |
| tissue_preservation_temperature | -80.0 |
| tissue_type | blood |
| type_status | NA |
| wild_captive | wild |
| work_order | 14096 |