Reference genome, PacBio-HiFi, Muscle tissue
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-07-23 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | restricted |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/11707bbb-beab-440d-a5a9-b6bdf9707cf9 |
| analysis_software | SMRTLink 25.1.0.257715 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1847/20250718_TSI_BRF_m84118_250718_062134_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_C01 |
| certainty | Certain |
| class | Insecta |
| collection_date | 2024-09-17 |
| collection_method | Hand collected |
| collector | Nathan Lo, Simon Ho, Younis Menkara |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Nathan Lo |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629206 |
| date_of_transfer | 2025-07-23 |
| date_of_transfer_to_archive | 2025-07-23 |
| decimal_latitude_public | -31.5 |
| decimal_longitude_public | 159.0 |
| dna_treatment | DNA sheared with Megaruptor, followed by Ligation of Twist universal adapter and amplified using 16-UDI index H01 |
| facility_project_code | PacBio_WGS52_965 |
| facility_sample_id | 965-4 |
| family | Cleridae |
| file_type | bam |
| flowcell_id | m84118_250718_062134_s2 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250718_TSI_BRF_m84118_250718_062134_s2 |
| genus | Cormodes |
| insert_size_range | 8567.0 |
| institution_name | the University of Sydeny |
| latitude | -31.5 |
| library_comments | AmpliFi ultra-low PacBio methods |
| library_construction_protocol | AmpliFi |
| library_id | 102.100.100/683180 |
| library_index_id | bc2064 |
| library_index_id_dual | bc2064 |
| library_index_seq_dual | TGCGTGATGCGAGTAT |
| library_index_sequence | TGCGTGATGCGAGTAT |
| library_location | BRF labs |
| library_ng_ul | 32.76 |
| library_pcr_cycles | 10.0 |
| library_prep_date | 2025-07-16 |
| library_prepared_by | Xiangning Liu |
| library_source | Genomic |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| lifestage | Adult organism |
| location_text | Blackburn Island |
| longitude | 159.0 |
| material_conc_ng_ul | 250.0 |
| material_extracted_by | Yu-Hsiang Ho |
| material_extraction_date | 2025-05-07 |
| material_extraction_method | Monarch HMW DNA Extraction Kit, Sodium Acetate precipitate |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | 24.0 |
| n_libraries_pooled | 2.0 |
| order | Coleoptera |
| phenotypic_sex | Male |
| phylum | Arthropoda |
| sample_custodian | Yu-Hsiang Ho, Nathan Lo |
| sample_id | 102.100.100/671150 |
| sample_quality | Suspect some DNA degradation |
| sample_type | Tissue sample |
| scientific_name | Cormodes darwini |
| scientific_name_authorship | Pascoe, 1860 |
| scientific_name_note | NA |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| species | darwini |
| specimen_id | USYD-Cooc2 |
| specimen_id_description | University of Sydney MEEP lab institutional ID |
| state_or_region | New South Wales |
| subspecies | NA |
| taxonomic_group | Beetle |
| ticket | BPAOPS-1847 |
| tissue_collection | Entomology |
| tissue_collection_type | Living collection |
| tissue_number | Cooc2 P2-3P |
| tissue_preservation | Refrigerate , elution buffer |
| tissue_preservation_temperature | 4.0 |
| tissue_type | Muscle tissue |
| type_status | unknown |
| wild_captive | Wild |
| work_order | 14104 |