Reference genome, PacBio-HiFi, Muscle tissue
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This dataset is currently under a short embargo period until July 23, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-07-23 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | restricted |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/11707bbb-beab-440d-a5a9-b6bdf9707cf9 |
| analysis_software | SMRTLink 25.1.0.257715 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1847/20250718_TSI_BRF_m84118_250718_062134_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_C01 |
| certainty | Certain |
| class | Insecta |
| collection_date | 2024-09-17 |
| collection_method | Hand collected |
| collector | Nathan Lo, Simon Ho, Younis Menkara |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Nathan Lo |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629206 |
| date_of_transfer | 2025-07-23 |
| date_of_transfer_to_archive | 2025-07-23 |
| decimal_latitude_public | -31.5 |
| decimal_longitude_public | 159.0 |
| dna_treatment | DNA sheared with Megaruptor, followed by Ligation of Twist universal adapter and amplified using 16-UDI index H01 |
| facility_project_code | PacBio_WGS52_965 |
| facility_sample_id | 965-4 |
| family | Cleridae |
| file_type | bam |
| flowcell_id | m84118_250718_062134_s2 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250718_TSI_BRF_m84118_250718_062134_s2 |
| genus | Cormodes |
| insert_size_range | 8567.0 |
| institution_name | the University of Sydeny |
| latitude | -31.5 |
| library_comments | AmpliFi ultra-low PacBio methods |
| library_construction_protocol | AmpliFi |
| library_id | 102.100.100/683180 |
| library_index_id | bc2064 |
| library_index_id_dual | bc2064 |
| library_index_seq_dual | TGCGTGATGCGAGTAT |
| library_index_sequence | TGCGTGATGCGAGTAT |
| library_location | BRF labs |
| library_ng_ul | 32.76 |
| library_pcr_cycles | 10.0 |
| library_prep_date | 2025-07-16 |
| library_prepared_by | Xiangning Liu |
| library_source | Genomic |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| lifestage | Adult organism |
| location_text | Blackburn Island |
| longitude | 159.0 |
| material_conc_ng_ul | 250.0 |
| material_extracted_by | Yu-Hsiang Ho |
| material_extraction_date | 2025-05-07 |
| material_extraction_method | Monarch HMW DNA Extraction Kit, Sodium Acetate precipitate |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Dissection |
| movie_length | 24.0 |
| n_libraries_pooled | 2.0 |
| order | Coleoptera |
| phenotypic_sex | Male |
| phylum | Arthropoda |
| sample_custodian | Yu-Hsiang Ho, Nathan Lo |
| sample_id | 102.100.100/671150 |
| sample_quality | Suspect some DNA degradation |
| sample_type | Tissue sample |
| scientific_name | Cormodes darwini |
| scientific_name_authorship | Pascoe, 1860 |
| scientific_name_note | NA |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| species | darwini |
| specimen_id | USYD-Cooc2 |
| specimen_id_description | University of Sydney MEEP lab institutional ID |
| state_or_region | New South Wales |
| subspecies | NA |
| taxonomic_group | Beetle |
| ticket | BPAOPS-1847 |
| tissue_collection | Entomology |
| tissue_collection_type | Living collection |
| tissue_number | Cooc2 P2-3P |
| tissue_preservation | Refrigerate , elution buffer |
| tissue_preservation_temperature | 4.0 |
| tissue_type | Muscle tissue |
| type_status | unknown |
| wild_captive | Wild |
| work_order | 14104 |