smooth scrub turpentine, Reference genome, PacBio-HiFi, leaf
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until May 28, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-05-28 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | no restrictions |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1786/20250523_TSI_BRF_m84118_250523_020601_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | 1_A01 |
| class | Magnoliopsida |
| collection_date | 2025-01-14 |
| collector | Manuela Cascini |
| common_name | smooth scrub turpentine |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Manuela Cascini |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/629188 |
| date_of_transfer | 2025-05-28 |
| date_of_transfer_to_archive | 2025-05-29 |
| decimal_latitude_public | -34.1 |
| decimal_longitude_public | 150.8 |
| dna_treatment | Pippin size selection and shearing |
| facility_project_code | NA |
| facility_sample_id | 917.0 |
| family | Myrtaceae |
| file_type | bam |
| flowcell_id | m84118_250523_020601_s1 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250523_TSI_BRF_m84118_250523_020601_s1 |
| genotypic_sex | not determined |
| genus | Rhodamnia |
| habitat | rainforest |
| insert_size_range | 17779.0 |
| institution_name | Australian Botanic Garden Mt Annan |
| latitude | -34.1 |
| library_comments | multiplexed with another samples from TSI |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/678606 |
| library_index_id_dual | bc2043 |
| library_index_seq_dual | ACGATGACGTGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 21.8 |
| library_prepared_by | Xiangning Liu |
| library_selection | Pippin size selection, shearing and HiFi prep |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | pacbio-hifi |
| location_text | ABGMA bed33 |
| longitude | 150.8 |
| material_conc_ng_ul | 61.9 |
| material_extracted_by | Manuela Cascini |
| material_extraction_date | 2025-01-24 |
| material_extraction_method | CTAB |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 3.0 |
| order | Myrtales |
| phenotypic_sex | not determined |
| phylum | Streptophyta |
| sample_id | 102.100.100/666685 |
| sample_quality | good |
| sample_type | DNA extract |
| scientific_name | Rhodamnia maideniana |
| scientific_name_authorship | C.T.White, 1937 |
| scientific_name_note | na |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| species | maideniana |
| specimen_id | A2013-1013 |
| specimen_id_description | IrisBG database accession number |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 1619536.0 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1786 |
| tissue_collection | Living collection |
| tissue_number | A2013-1013_Rh_maiden |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | leaf |
| work_order | 14093 |