Collared delma, Reference Genome, PacBio-HiFi, tail clip
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until August 14, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-08-14 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Location information restricted |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.3.0.253824 |
| ancillary_notes | live |
| associated_media | specimen identication image - chin pattern |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1859/20250812_TSI_AGRF_CAGRF24070336_m84073_250725_063015_s1/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | A01 |
| certainty | uncertain |
| class | Reptilia |
| collection_date | 2024-10-30 |
| collection_method | Hand |
| collector | Stephen Peck |
| common_name | Collared delma |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Stephen Peck |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358889 |
| date_of_transfer | 2025-08-14 |
| date_of_transfer_to_archive | 2025-08-15 |
| decimal_latitude_public | -27.5 |
| decimal_longitude_public | 152.8 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24070336 |
| facility_sample_id | 629020.0 |
| family | Pygopodidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_250725_063015_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250812_TSI_AGRF_CAGRF24070336_m84073_250725_063015_s1 |
| genotypic_sex | not determined |
| genus | Delma |
| health_state | healthy |
| insert_size_range | 13000.0 |
| institution_name | University of Southern Queensland |
| latitude | -27.5 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/629020 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 300pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2025-06-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Adult |
| location_text | Sample collected near Anstead bushland |
| longitude | 152.8 |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 2.0 |
| order | Squamata |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Stephen Peck |
| sample_id | 102.100.100/628731 |
| sample_quality | Freshly collected |
| sample_type | tissue sample |
| scientific_name | Delma torquata |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Moggil |
| species | torquata |
| specimen_id_description | JP Emery research |
| state_or_region | Queensland |
| subspecies | NA |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1859 |
| tissue_collection_type | Collected from a live specimen during field survey |
| tissue_number | Z81170 |
| tissue_preservation | Victoria Museum protocol |
| tissue_preservation_temperature | 2.0 |
| tissue_type | tail clip |
| type_status | NA |
| wild_captive | wild |
| work_order | NA |