Lord Howe Island Flax Snail, Reference Genome, PacBio-HiFi
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This dataset is currently under a short embargo period until August 14, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-08-14 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | location information restricted |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.3.0.253824 |
| associated_media | images in Australian Museum database |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1861/20250812_TSI_AGRF_CAGRF24110365_m84073_250808_072448_s2/ |
| bioplatforms_project | Threatened Species Initiative |
| cell_postion | B02 |
| certainty | certain |
| class | Gastropoda |
| collection_date | 2024-11-06 |
| collection_method | hand collected |
| collector | Isabel Hyman, Frank Koehler, Nelia Perry, Craig Stehn, Lauren Hook |
| collector_sample_id | L1588 |
| common_name | Lord Howe Island Flax Snail |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Isabel Hyman, Nelia Perry |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358894 |
| date_of_transfer | 2025-08-14 |
| date_of_transfer_to_archive | 2025-08-15 |
| decimal_latitude_public | -31.5 |
| decimal_longitude_public | 159.1 |
| dna_treatment | SHEARING followed by PCR |
| experimental_design | NA |
| facility_project_code | CAGRF24110365 |
| facility_sample_id | 626259.0 |
| family | Bothryembryontidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_250808_072448_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250812_TSI_AGRF_CAGRF24110365_m84073_250808_072448_s2 |
| genotypic_sex | hermaphrodite |
| genus | Placostylus |
| health_state | unknown |
| insert_size_range | 9000.0 |
| institution_name | Australian Museum |
| latitude | -31.5 |
| library_comments | NA |
| library_construction_protocol | Ampli-Fi Amplifying genomic DNA for SMRTbell library preparation and HiFi sequencing |
| library_id | 102.100.100/626259 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 160pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | 8.0 |
| library_pcr_reps | NA |
| library_prep_date | 2025-07-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGA |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | Lord Howe Island: Track between Anderson Rd and Middle Beach Rd. |
| longitude | 159.1 |
| material_conc_ng_ul | 368.25 |
| material_extracted_by | Elspeth McLennan | Nelia Perry |
| material_extraction_date | 2024-11-22 |
| material_extraction_method | PacBio Nanoband DNA extraction kit, Black Mystery Snail protocol |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Stylommarophora |
| phenotypic_sex | hermaphrodite |
| phylum | Mollusca |
| sample_custodian | Isabel Hyman, Nelia Perry |
| sample_id | 102.100.100/625271 |
| sample_quality | possibly high levels of mucous |
| sample_type | tissue sample from penis |
| scientific_name | Placostylus bivaricosus bivaricosus |
| scientific_name_authorship | Gaskoin, 1855 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | bivaricosus |
| specimen_id | AM C272299 |
| specimen_id_description | Museum registration number |
| state_or_region | New South Wales |
| subspecies | bivaricosus |
| taxon_id | 216450.0 |
| taxonomic_group | land snail |
| ticket | BPAOPS-1861 |
| tissue_collection | LHI2023-2024 |
| tissue_collection_type | wild population |
| tissue_number | L1588 |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| type_status | not type material |
| wild_captive | wild |
| work_order | 14078 |