yakka skink, Reference Genome, PacBio-HiFi, tail clip
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This dataset is currently under a short embargo period until August 14, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-08-14 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | Location information restricted |
| ala_specimen_url | NA |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.3.0.253824 |
| ancillary_notes | Live, Collected from breeding aggregation 16, released back to wild, first captured as a juvenile on 16/03/2022, 5th time captured at aggregation 16, potentially a sibling to ER3800. |
| associated_media | specimen identication image - chin pattern |
| bait_set_name | NA |
| bait_set_reference | NA |
| barcode_id | 1221197.0 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/pacbio-hifi/BPAOPS-1860/20250812_TSI_AGRF_CAGRF24070336_m84073_250729_074608_s3/ |
| bioplatforms_project | Threatened Species Initiative |
| birth_date | 2022-03-01 |
| cell_postion | C01 |
| certainty | uncertain |
| class | Reptilia |
| collection_date | 2024-03-26 |
| collection_method | Elliot trap, CE IRN 372083 |
| collector | Stephen Peck, IRN 122660 |
| collector_sample_id | ER3801 |
| common_name | yakka skink |
| country | Australia |
| data_context | Reference Genome |
| data_custodian | Stephen Peck |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/358889 |
| date_of_transfer | 2025-08-14 |
| date_of_transfer_to_archive | 2025-08-15 |
| decimal_latitude_public | 26.4 |
| decimal_longitude_public | 146.2 |
| dna_treatment | SHEARING followed by PCR |
| experimental_design | NA |
| facility_project_code | CAGRF24070336 |
| facility_sample_id | 625994.0 |
| family | Sauria |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | m84073_250729_074608_s3 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250812_TSI_AGRF_CAGRF24070336_m84073_250729_074608_s3 |
| genotypic_sex | not determined |
| genus | Egernia |
| habitat | Open mulga woodlands RE 6.5.10 |
| health_state | healthy |
| insert_size_range | 9000.0 |
| institution_name | University of Southern Queensland |
| latitude | 26.4 |
| library_comments | NA |
| library_construction_protocol | Ampli-Fi Amplifying genomic DNA for SMRTbell library preparation and HiFi sequencing |
| library_id | 102.100.100/625994 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 160pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | 8.0 |
| library_pcr_reps | NA |
| library_prep_date | 2025-07-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGA |
| library_type | PacBio-HiFi |
| lifestage | sub-adult |
| location_text | Wintara Rd, 500 m from the Bollon Rd intersection, site IRN 201923 |
| longitude | 146.2 |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | NA |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Squamata |
| phenotypic_sex | not determined |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Stephen Peck |
| sample_id | 102.100.100/625015 |
| sample_quality | Freshly collected |
| sample_type | tissue sample |
| scientific_name | Egernia rugosa |
| scientific_name_authorship | De Vis 1888 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| source_population | Charleville |
| species | rugosa |
| specimen_id | ER3801 |
| specimen_id_description | PhD research database - Stephen Peck |
| state_or_region | Queensland |
| subspecies | NA |
| taxonomic_group | Reptile |
| ticket | BPAOPS-1860 |
| tissue_collection_type | Collected from a live specimen during field survey |
| tissue_number | Z81163 |
| tissue_preservation | Victoria Museum protocol |
| tissue_preservation_temperature | 2.0 |
| tissue_type | tail clip |
| type_status | NA |
| wild_captive | wild |
| work_order | NA |