Dugong, population genetics, Illumina-shortread, skin
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This dataset is currently under a short embargo period until August 21, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-08-21 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | DRAGEN BCLConvert 4.3.16 |
| analysis_software_version | N/A |
| ancillary_notes | unknown |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-shortread/BPAOPS-1879/20250821_TSI_BRF_629201_232YL2LT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1879 |
| cell_postion | N/A |
| class | Mammalia |
| collection_date | 2010-05-10 |
| collection_method | unknown |
| collector | unknown |
| collector_sample_id | Dugong_Shark_Bay_May2010 |
| common_name | Dugong |
| country | Australia |
| data_context | population genetics |
| data_custodian | Eva Paulus |
| data_type | Illumina-shortread |
| dataset_id | 102.100.100/629201 |
| date_of_transfer | 2025-08-21 |
| date_of_transfer_to_archive | 2025-08-25 |
| dna_treatment | N/A |
| experimental_design | N/A |
| facility_project_code | NA |
| facility_sample_id | 682056_TSI_BRF_232YL2LT3_TTGGAATTCC-ACGTCAATAC |
| family | Dugongidae |
| fast5_compression | N/A |
| file_type | N/A |
| flow_cell_id | 232YL2LT3 |
| flowcell_id | 232YL2LT3 |
| flowcell_type | NovaSeq X Series 25B |
| folder_name | 20250821-232YL2LT3-WO26009-WO27004 |
| genus | Dugong |
| insert_size_range | 608.0 |
| institution_name | Dugong_Shark_Bay_May2010 |
| library_comments | N/A |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 682056 |
| library_index_id | UDP0086 |
| library_index_id_dual | UDP0086 |
| library_index_seq_dual | ACGTCAATAC |
| library_index_sequence | TTGGAATTCC |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 14.4 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATttggaattccGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACAacgtcaatacTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 6.0 |
| library_pcr_reps | N/A |
| library_prepared_by | Lachlan Morrison |
| library_selection | N/A |
| library_source | gDNA |
| library_strategy | Tagmentation |
| library_type | illumina-shortread |
| lifestage | not determined |
| location_text | Shark_Bay |
| material_conc_ng_ul | 224.0 |
| material_extracted_by | Eva Paulus |
| material_extraction_date | 2025-05-01 |
| material_extraction_method | Qiagen Blood & Tissue kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 1.0 |
| order | Sirenia |
| phenotypic_sex | not determined |
| phylum | Chordata |
| sample_custodian | Eva Paulus |
| sample_id | 102.100.100/670054 |
| sample_type | tissue sample |
| scientific_name_note | Müller, 1776 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| species | dugon |
| specimen_id | DB59 |
| specimen_id_description | Shark_Bay |
| state_or_region | Western_Australia |
| taxon_id | 29137.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1879 |
| tissue_collection_type | university |
| tissue_number | DB59 |
| tissue_preservation | ethanol |
| tissue_preservation_temperature | -20.0 |
| tissue_type | skin |
| wild_captive | wild |