Maugean skate, Illumina-shortread, Muscle
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This dataset is currently under a short embargo period until February 19, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-02-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Restricted |
| ala_specimen_url | NA |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-shortread/BPAOPS-1753/20250217_TSI_AGRF_CAGRF24100109_22W5WFLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1753 |
| certainty | Certain |
| class | Chondrichthyes |
| collection_date | 2024-08-05 |
| collector | Jayson Semmens & David Moreno |
| collector_sample_id | Juvenile 05/08/2024 |
| common_name | Maugean skate |
| country | Australia |
| data_custodian | Jayson Semmens, David Moreno, Tzu Nin Kwan |
| data_type | Illumina-shortread |
| dataset_id | 102.100.100/358892 |
| date_of_transfer | 2025-02-19 |
| date_of_transfer_to_archive | 2025-02-19 |
| death_date | 2024-08-05 |
| decimal_latitude_public | -42.2 |
| decimal_longitude_public | 145.4 |
| facility_code | CAGRF24100109 |
| facility_project_code | CAGRF24100109 |
| family | Rajidae |
| flow_cell_id | 22W5WFLT3 |
| flowcell_id | 22W5WFLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20250219_TSI_AGRF_CAGRF24100109_22W5WFLT3 |
| genotypic_sex | not determined |
| genus | Zearaja |
| habitat | Estuarine |
| health_state | NA |
| insert_size_range | 430.0 |
| institution_name | Institute for Marine and Antarctic Studies (IMAS) |
| latitude | -42.2 |
| library_construction_protocol | Illumina Ribo-Zero Plus |
| library_id | 626235 |
| library_index_seq_dual | UDP0317-F & UDP0317-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 8.32 |
| library_oligo_sequence_dual | ACTAATCTCC-CACTTAATCT |
| library_prep_date | 2025-01-24 |
| library_prepared_by | MB |
| library_source | RNA |
| lifestage | juvenile |
| longitude | 145.4 |
| material_conc_ng_ul | 25.0 |
| material_extracted_by | Tzu Nin Kwan |
| material_extraction_date | 2024-10-01 |
| material_extraction_method | Qiagen Rneasy mini kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | claspers absent |
| order | Rajiformes |
| phenotypic_sex | Female |
| phylum | Chordata |
| prior_genetics | Weltz, K., Lyle, J.M., Semmens, J.M. et al. Population genetics of the endangered Maugean skate (Zearaja maugeana) in Macquarie Harbour, Tasmania. Conserv Genet 19, 1505–1512 (2018). https://doi.org/10.1007/s10592-018-1117-0 |
| sample_custodian | Jayson Semmens, David Moreno, Tzu Nin Kwan |
| sample_id | 102.100.100/625247 |
| sample_quality | RNA degradation minimal |
| sample_type | tissue sample |
| scientific_name | Zearaja maugeana |
| scientific_name_authorship | Last & Gledhill, 2007 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| source_population | Macquire Harbour |
| species | maugeana |
| specimen_id | MZ 4C-8-0_1 |
| specimen_id_description | Maugeas Juvenile Skate IMAS 4C-8-0_050824 |
| state_or_region | Tasmania |
| subspecies | NA |
| taxon_id | 496415.0 |
| taxonomic_group | fish |
| ticket | BPAOPS-1753 |
| tissue_collection | Molecular RNA |
| tissue_collection_type | University |
| tissue_number | 1 RNA Muscle |
| tissue_preservation | RNAlater |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Muscle |
| type_status | Wild |
| wild_captive | Wild, MSK035 |
| work_order | 14075 |