Dugong, population genetics, Illumina FASTQ, skin
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This dataset is currently under a short embargo period until February 11, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
This dataset has no data
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-02-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Location information restricted |
| analysis_software | DRAGEN BCLConvert |
| analysis_software_version | 4.1.23 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1748/Lane3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1748 |
| certainty | certain |
| class | Mammalia |
| collection_date | 2018-08-06 |
| collector | Rachel Groom, Christophe Cleguer, Shaun Evans, Sebastian Evans, Damian Pracy, Stanley Allen, David Barrett, Steven O'Keefe, Anton Johnston |
| common_name | Dugong |
| country | Australia |
| data_context | population genetics |
| data_custodian | Eva Paulus |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358899 |
| date_of_transfer | 2025-02-11 |
| date_of_transfer_to_archive | 2025-02-17 |
| description | Dugong Illumina WGS |
| facility_project_code | NA |
| facility_sample_id | 628079_TSI_BRF_22KYTHLT4_GCCGCACTCT-TCCGACCTCG |
| family | Dugongidae |
| file_type | fastq.gz |
| flowcell_id | 22KYTHLT4 |
| flowcell_type | NovaSeq X 25B |
| folder_name | 20250210_TSI_BRF_358899_22KYTHLT4 |
| genus | Dugong |
| habitat | shallow marine |
| insert_size_range | 400 bp |
| institution_name | James Cook University |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 102.100.100/628079 |
| library_index_id | UDP0029 |
| library_index_id_dual | UDP0029 |
| library_index_seq | GCCGCACTCT |
| library_index_seq_dual | TCCGACCTCG |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.54 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgccgcactctCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACAC tccgacctcgTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 6.0 |
| library_pcr_reps | N/A |
| library_prepared_by | Lachlan Morrison |
| library_source | Genomic |
| library_strategy | Tagmentation |
| library_type | illumina-shortread |
| lifestage | adult organism |
| location_text | Gulf of Carpentaria |
| material_conc_ng_ul | 53.0 |
| material_extracted_by | Eva Paulus |
| material_extraction_date | 2024-12-01 |
| material_extraction_method | DNeasy Qiagen Blood & Tissue Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | direct observation |
| n_libraries_pooled | 1.0 |
| order | Sirenia |
| phenotypic_sex | female |
| phylum | Chordata |
| sample_custodian | Eva Paulus |
| sample_id | 102.100.100/627091 |
| sample_type | tissue sample |
| scientific_name | Dugong dugon |
| scientific_name_authorship | Müller, 1776 |
| sequencing_facility | BRF |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| species | dugon |
| specimen_id | EP03 |
| specimen_id_description | Eva_Paulus_sample_03 |
| state_or_region | Northern Territory |
| taxon_id | 29137.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1748 |
| tissue_collection_type | university |
| tissue_number | NT17044 |
| tissue_preservation | ethanol |
| tissue_preservation_temperature | -20.0 |
| tissue_type | skin |
| wild_captive | wild |
| work_order | 14083 |