King Island brown thornbill, population genetics, Illumina FASTQ, blood
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-02-03 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | no |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.3.6 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1739/20250129_TSI_UNSW_22VWF3LT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1739 |
| certainty | not determined |
| class | Aves |
| collection_date | 2023-03-13 |
| collection_method | mist net |
| collector | Cat Young |
| collector_sample_id | BTB9 |
| common_name | King Island brown thornbill |
| country | Australia |
| data_context | population genetics |
| data_custodian | Ross Crates |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358895 |
| date_of_transfer | 2025-02-03 |
| date_of_transfer_to_archive | 2025-02-04 |
| facility_project_code | Q0015999 |
| facility_sample_id | MIL14680A9 |
| family | Acanthizidae |
| file_type | fastq.gz |
| flowcell_id | 22VWF3LT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250129_TSI_UNSW_22VWF3LT3 |
| genotypic_sex | not determined |
| genus | Acanthiza |
| health_state | released alive |
| insert_size_range | 150bp PE |
| institution_name | ANU/USYD |
| library | UDP0172 |
| library_construction_protocol | Illumina DNA PCR Free Prep |
| library_id | 102.100.100/626268 |
| library_index_seq_dual | TTCACGAGAC-AGATTGTTAC |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 15.067 |
| library_pcr_cycles | N/A |
| library_pcr_reps | N/A |
| library_prep_date | 2025-01-21 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | illumina-shortread |
| lifestage | adult |
| location_text | King Island |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | not determined |
| n_libraries_pooled | 21.0 |
| order | Passeriformes |
| phenotypic_sex | unknown |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Ross Crates |
| sample_id | 102.100.100/625280 |
| sample_type | tissue |
| scientific_name | Acanthiza pusilla |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | version 1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | Pegarah |
| species | pusilla |
| specimen_id | BTB9 |
| state_or_region | Tasmania |
| subspecies | magnirostris |
| taxon_id | 117193.0 |
| ticket | BPAOPS-1739 |
| tissue_collection_type | wild living population |
| tissue_number | ANU_BTB9_BLOOD |
| tissue_preservation | EtOH |
| tissue_preservation_temperature | 4.0 |
| tissue_type | blood |
| wild_captive | wild |
| work_order | 14079 |