Brown thornbill, population genetics, Illumina FASTQ, muscle
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until February 3, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
This dataset has no data
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2026-02-03 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | no |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.3.6 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1739/20250129_TSI_UNSW_22VWF3LT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1739 |
| class | Aves |
| collection_method | mist net |
| collector | Dejan Stojanovic |
| collector_sample_id | BTB2 |
| common_name | Brown thornbill |
| country | Australia |
| data_context | population genetics |
| data_custodian | Ross Crates |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358895 |
| date_of_transfer | 2025-02-03 |
| date_of_transfer_to_archive | 2025-02-04 |
| death_date | 2023-04-06 |
| facility_project_code | Q0015999 |
| facility_sample_id | MIL14680A2 |
| family | Acanthizidae |
| file_type | fastq.gz |
| flowcell_id | 22VWF3LT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250129_TSI_UNSW_22VWF3LT3 |
| genotypic_sex | not determined |
| genus | Acanthiza |
| health_state | collected for genome sequencing |
| insert_size_range | 150bp PE |
| institution_name | ANU/USYD/TMAG |
| library | UDP0165 |
| library_construction_protocol | Illumina DNA PCR Free Prep |
| library_id | 102.100.100/626261 |
| library_index_seq_dual | TTAACCTTCG-AGGCCAGACA |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 121.191 |
| library_pcr_cycles | N/A |
| library_pcr_reps | N/A |
| library_prep_date | 2025-01-21 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | illumina-shortread |
| lifestage | adult |
| location_text | Hobart |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | dissection |
| n_libraries_pooled | 21.0 |
| order | Passeriformes |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | PRJNA1044448 |
| sample_custodian | TMAG |
| sample_id | 102.100.100/625273 |
| sample_type | tissue |
| scientific_name | Acanthiza pusilla |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | version 1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | The Lea Conservation Area |
| species | pusilla |
| specimen_id | B974 |
| state_or_region | Tasmania |
| subspecies | diemenensis |
| taxon_id | 117193.0 |
| ticket | BPAOPS-1739 |
| tissue_collection_type | wild living population |
| tissue_number | ANU_B974_MUSCLE |
| tissue_preservation | EtOH |
| tissue_preservation_temperature | 4.0 |
| tissue_type | muscle |
| wild_captive | wild |
| work_order | 14079 |