Yarra pygmy perch, Transcriptome, Illumina FASTQ, liver
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-09-10 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| ancillary_notes | captive breeding program |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1677/20240910_TSI_AGRF_CAGRF24060205_22NFN5LT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1677 |
| certainty | moderated |
| class | Actinopterygii |
| collection_date | 2023-04-12 |
| collection_method | Hand net |
| collector | Prof Luciano Beheregaray, Dr Chris Brauer, Dr Jonathan Sandoval |
| collector_sample_id | TSIYPP03 |
| common_name | Yarra pygmy perch |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Luciano Beheregaray |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358887 |
| date_of_transfer | 2024-09-10 |
| date_of_transfer_to_archive | 2024-09-11 |
| death_date | 2023-04-12 |
| decimal_latitude_public | -35.5 |
| decimal_longitude_public | 138.9 |
| facility_project_code | CAGRF24060205 |
| facility_sample_id | 17047-2 |
| family | Percichthyidae |
| flowcell_id | 22NFN5LT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240910_TSI_AGRF_22NFN5LT3 |
| genotypic_sex | not determined |
| genus | Nannoperca |
| habitat | Water channel |
| health_state | Diseased but healthy at the time of death |
| insert_size_range | 421.0 |
| institution_name | Flinders University |
| latitude | -35.5 |
| library_construction_protocol | Illumina Stranded Total RNA w Ribo-Zero Plus (WTS) |
| library_id | 102.100.100/625896 |
| library_index_seq_dual | UDP0278-F & UDP0278-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 5.11 |
| library_oligo_sequence_dual | GTGGACAAGT-CCGTGGCCTT |
| library_pcr_cycles | 13.0 |
| library_prep_date | 2024-07-29 |
| library_prepared_by | MB |
| library_source | RNA |
| library_strategy | RNA sequencing |
| library_type | illumina-transcriptomics |
| lifestage | adult |
| location_text | Mundoo Channel, Hindmarsh Island |
| longitude | 138.9 |
| material_extracted_by | Diana Vornicu |
| material_extraction_date | 2024-06-01 |
| material_extraction_method | RNeasy Mini Kit (QIAGEN) |
| material_extraction_type | RNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | dissection |
| order | Perciformes |
| phenotypic_sex | male |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Luciano Beheregaray |
| sample_id | 102.100.100/624918 |
| sample_quality | High quality |
| sample_type | Muscle tissue sample |
| scientific_name | Nannoperca obscura |
| scientific_name_authorship | Klunzinger 1872 |
| scientific_name_note | NA |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| source_population | Murray-Darling Basin |
| species | obscura |
| specimen_id | TSIYPP02 |
| specimen_id_description | Molecular Ecology Lab Flinders University |
| state_or_region | South Australia |
| subspecies | NA |
| taxon_id | 135771.0 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1677 |
| tissue_collection | YPPMELFU |
| tissue_collection_type | University |
| tissue_number | TSIYPP02M |
| tissue_preservation | RNAlater, frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | liver |
| type_status | NA |
| wild_captive | captive |
| work_order | 13074 |