Maugean skate, Transcriptome, Illumina FASTQ, Spleen
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-07-22 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Restricted |
| ala_specimen_url | NA |
| analysis_software | NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert |
| analysis_software_version | v1.2.2.48004; v4.6.7; v07.021.645.4.0.3 |
| ancillary_notes | expected to be DArTseq at later stage |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1623/20240722_TSI_AGRF_22MMVTLT3/ |
| bioplatforms_project | Threatened Species Initiative |
| ccg_jira_ticket | BPAOPS-1623 |
| class | Chondrichthyes |
| collection_date | 2024-03-23 |
| collector | Jayson Semmens & David Moreno |
| collector_sample_id | Juvenile 23/03/2024 |
| common_name | Maugean skate |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Jayson Semmens, David Moreno, Kwan Tzu Nin |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358886 |
| date_of_transfer | 2024-07-22 |
| date_of_transfer_to_archive | 2024-07-22 |
| decimal_latitude_public | -42.2 |
| decimal_longitude_public | 145.4 |
| description | Zearaja maugeana |
| facility_project_code | QAGRF24060206 |
| facility_sample_id | 16915-9 |
| family | Rajidae |
| file_type | .fastq.gz |
| flowcell_id | 22MMVTLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240722_TSI_AGRF_22MMVTLT3 |
| genotypic_sex | not determined |
| genus | Zearaja |
| habitat | Estuarine |
| health_state | unknown |
| insert_size_range | 120 - 180 bp |
| institution_name | Institute for Marine and Antarctic Studies (IMAS) |
| latitude | -42.2 |
| library_comments | Partially Degraded RNA |
| library_construction_protocol | Illumina Stranded RNA with Ribo-Zero Plus |
| library_id | 102.100.100/625893 |
| library_index_id_dual | UDP0381-F & UDP0381-R |
| library_index_seq_dual | TGGTTCTCAT-CTCAAGGCCG |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 13.5 |
| library_pcr_cycles | 13.0 |
| library_prep_date | 2024-07-12 |
| library_prepared_by | JM |
| library_selection | RANDOM |
| library_source | RNA |
| library_type | illumina-transcriptomics |
| lifestage | juvenile |
| longitude | 145.4 |
| material_conc_ng_ul | 75.0 |
| material_extracted_by | Kwan Tzu Nin |
| material_extraction_date | 2024-06-18 |
| material_extraction_method | Qiagen Rneasy mini kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | claspers |
| order | Rajiformes |
| phenotypic_sex | Male |
| phylum | Chordata |
| prior_genetics | Weltz, K., Lyle, J.M., Semmens, J.M. et al. Population genetics of the endangered Maugean skate (Zearaja maugeana) in Macquarie Harbour, Tasmania. Conserv Genet 19, 1505–1512 (2018). https://doi.org/10.1007/s10592-018-1117-2 |
| sample_custodian | Jayson Semmens, David Moreno, Kwan Tzu Nin |
| sample_id | 102.100.100/624915 |
| sample_quality | RNA degradation minimal |
| sample_type | tissue sample |
| scientific_name | Zearaja maugeana |
| scientific_name_authorship | Last & Gledhill, 2007 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | X-LEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| source_population | Table Head, Macquire Harbour |
| species | maugeana |
| specimen_id | MZ_juv1_9 |
| specimen_id_description | Maugeans Juvenile Skate IMAS 23032024 |
| state_or_region | Tasmania |
| subspecies | NA |
| taxon_id | 496415.0 |
| taxonomic_group | fish |
| ticket | BPAOPS-1623 |
| tissue_collection | Molecular RNA |
| tissue_collection_type | University |
| tissue_number | 9 RNA spleen |
| tissue_preservation | RNA later |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Spleen |
| wild_captive | Wild |
| work_order | 13073 |