Eastern barred bandicoot, Transcriptome, Illumina FASTQ, Central gonad
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members |
| Access Control Date | 2025-08-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| access_rights | Open access |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/illumina-fastq/BPAOPS-1660/20240708_TSI_UNSW_22KTT3LT3/ |
| ccg_jira_ticket | BPAOPS-1660 |
| certainty | Certain |
| class | Mammalia |
| collection_date | 2023-12-08 |
| collector | Duncan Sutherland |
| common_name | Eastern barred bandicoot |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Carolyn Hogg |
| data_type | Illumina FASTQ |
| dataset_id | 102.100.100/358880 |
| date_of_transfer | 2024-08-23 |
| date_of_transfer_to_archive | 2024-09-02 |
| death_date | 2023-12-08 |
| facility_project_code | Q0014487 |
| facility_sample_id | PEE13817A44 |
| family | Peramelidae |
| file_type | fastq.gz |
| flowcell_id | 22KTT3LT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20240708_TSI_UNSW_22KTT3LT3 |
| genus | Perameles |
| insert_size_range | 150 PE |
| institution_name | University of Sydney |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 102.100.100/473728 |
| library_index_id | UDP0043 |
| library_index_seq | CCATCTCGCC-TTCTATGGTT |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 91.6 |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | 1.0 |
| library_prep_date | 2024-06-25 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | illumina-transcriptomics |
| lifestage | unknown |
| location_text | Phillip Island |
| material_conc_ng_ul | 1012.0 |
| material_extracted_by | Emma Peel |
| material_extraction_date | 2024-04-10 |
| material_extraction_method | Rneasy mini kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2025-08-26 |
| metadata_revision_filename | 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_of_determination | Examination |
| n_libraries_pooled | 49.0 |
| order | Peramelemorphia |
| phenotypic_sex | Male |
| phylum | Chordata |
| sample_custodian | Carolyn Hogg |
| sample_id | 102.100.100/358905 |
| sample_quality | Good |
| sample_type | Tissue sample |
| scientific_name | Perameles gunnii |
| sequencing_facility | UNSW |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| species | gunnii |
| specimen_id | 804366E_gonad |
| specimen_id_description | 804366E |
| state_or_region | Victoria |
| taxon_id | 37737.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1660 |
| tissue_collection | University of Sydney |
| tissue_collection_type | University |
| tissue_number | Central gonad |
| tissue_preservation | Frozen |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Central gonad |
| wild_captive | wild |
| work_order | 14070 |