Chuditch, Population Genetics, Illumina ddRAD-seq, ear margin

Dasyuridae, Dasyurus geoffroii, D10978, Mammal, Project Lead: Kym Ottewell | DBCA

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members
Access Control Date 2026-01-13
Access Control Mode date
Sequence Data Type illumina-ddrad
Related Data Attached metadata spreadsheets were produced when data was generated.
access_rights Location information restricted
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1737/20250109_TSI_AGRF_22VJF7LT3/
bioplatforms_project Threatened Species Initiative
bpa_dataset_id 102.100.100/358891
class Mammalia
collection_date 2021-06-15
collector Michelle Drew | DBCA
collector_sample_id 943094320346169.0
common_name Chuditch
country Australia
data_context Population Genetics
data_custodian Kym Ottewell | DBCA
data_type Illumina ddRAD-seq
dataset_id 102.100.100/358891
date_of_transfer 2025-01-13
date_of_transfer_to_archive 2025-01-13
experimental_design EcoRI/MspI
facility_project_code CAGRF24100006
family Dasyuridae
flowcell_id 22VJF7LT3
flowcell_type 10B
folder_name 20250109_TSI_AGRF_22VJF7LT3
genus Dasyurus
insert_size_range 280-342 bp
institution_name Department of Biodiversity, Conservation and Attractions
library_construction_protocol ddRAD (based on Peterson et al 2012)
library_layout paired end
library_location AGRF_Perth
library_oligo_sequence AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGAC*G
library_pcr_cycles 11.0
library_pcr_reps 7.0
library_prep_date 2024-12-16
library_prepared_by Jeremy Beerkens
library_selection Restriction Digest
library_source GENOMIC
library_strategy RAD-Seq
library_type illumina-ddrad
lifestage unknown
location_text Julimar State Forest
material_conc_ng_ul 10.0
material_extracted_by Shelley McArthur | DBCA
material_extraction_date 2021-07-27
material_extraction_method TNES Salt extraction
material_extraction_type DNA
metadata_revision_date 2025-08-26
metadata_revision_filename 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx
n_libraries_pooled 5.0
order Dasyuromorphia
phenotypic_sex M
phylum Chordata
sample_custodian Kym Ottewell | DBCA
sample_quality good
sample_type ear biopsy
scientific_name Dasyurus geoffroii
scientific_name_authorship Gould, 1982
sequencing_facility AGRF_Melbourne
sequencing_model NovaSeq X Plus
sequencing_platform ILLUMINA
source_population Julimar State Forest
species geoffroii
specimen_id D10978
specimen_id_description DBCA_internal_identifier
state_or_region Western Australia
taxon_id 63145.0
taxonomic_group Mammal
ticket BPAOPS-1737
tissue_collection_type wild organism
tissue_number T10978
tissue_preservation ethanol
tissue_preservation_temperature -18.0
tissue_type ear margin
wild_captive wild
work_order 14076