Spidery wattle/Balcanoona wattle, Population Genetics, Illumina FASTQ, Leaf

Leguminosae, Acacia araneosa/ rivalis hybrid, 22_HYB_HUT_18, Plant, Project Lead: Chelsea Hampel/ Colette Blyth, University of Adelaide

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:tsi-consortium-members
Access Control Date 2024-04-11
Access Control Mode date
Sequence Data Type illumina-ddrad
Related Data Attached metadata spreadsheets were produced when data was generated.
access_rights location information
associated_media photo
base_url https://downloads-qcif.bioplatforms.com/bpa/tsi_staging/ddrad/BPAOPS-1373/20230411_TSI_AGRF_CAGRF221213132_H73YHDRX3/
bioplatforms_project Threatened Species Initiative
bpa_dataset_id 102.100.100/358810
class Magnoliopsida
collection_date 2022-11-17
collection_method Removal of leaves from living plant, and storing on silica gel. Refer to methods in https://doi.org/10.3390/d12080381
collector Chelsea Hampel/ Colette Blyth, University of Adelaide
collector_sample_id 22_HYB_HUT_18
common_name Spidery wattle/Balcanoona wattle
country Australia
data_context Population Genetics
data_custodian Chelsea Hampel/ Colette Blyth, University of Adelaide
data_type Illumina FASTQ
dataset_id 102.100.100/358810
dataset_url Chelsea Hampel/ Colette Blyth
date_of_transfer 2023-04-12
date_of_transfer_to_archive 2023-04-12
description Acacia ddRAD
experimental_design PstI & MseI
facility_project_code CAGRF221213132
family Leguminosae
flowcell_id H73YHDRX3
flowcell_type SP 300
folder_name 20230411_TSI_AGRF_CAGRF221213132_H73YHDRX3
genotypic_sex not determined
genus Acacia
habitat Arid, mounatinous
health_state None
insert_size_range 280-342
institution_name University of Adelaide
library_construction_protocol ddRAD (based on Peterson et al 2012)
library_layout Paired End
library_location AGRF Melbourne
library_pcr_cycles 11.0
library_pcr_reps 7.0
library_prep_date 2023-03-31
library_prepared_by Simon Farrelly
library_selection Reduced Representation
library_source Genomic
library_strategy RAD-Seq
library_type ddRAD
lifestage juvenile
location_text Arkaroola sanctuary. ~3km south of Arkaroola village
metadata_revision_date 2025-08-26
metadata_revision_filename 20250826_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx
n_libraries_pooled 2.0
order Fabales
phenotypic_sex not determined
phylum Spermatophyta
sample_custodian Chelsea Hampel/ Colette Blyth, University of Adelaide
sample_quality Good
sample_type Leaf tissue
scientific_name Acacia araneosa/ Acacia rivalis hybrid
scientific_name_authorship D.J.E. Whibley 1976
sequencing_facility AGRF Melbourne
sequencing_model Illumina NovaSeq 6000
sequencing_platform ILLUMINA
species araneosa/ rivalis hybrid
specimen_id 22_HYB_HUT_18
specimen_id_description University of adelaide - Advanced DNA, Identification and Forensic Facility internal identifier
state_or_region South Australia
taxon_id 1174718.0
taxonomic_group Plant
ticket BPAOPS-1373
tissue_collection Silica gel
tissue_collection_type University
tissue_number 22_HYB_HUT_18
tissue_preservation Silica gel
tissue_preservation_temperature Room Temperature
tissue_type Leaf
work_order 14044