Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395844
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj042 |
| Access Control Date | 2025-09-20 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1690/20240919_PP_AGRF_CAGRF24050038_m84073_240914_195849_s4/ |
| bioplatforms_dataset_id | 102.100.100/399056 |
| bioplatforms_library_id | 102.100.100/398106 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP042_T_minima |
| bioplatforms_sample_id | 102.100.100/395844 |
| ccg_jira_ticket | BPAOPS-1690 |
| cell_postion | A01 |
| class | Pucciniomycetes |
| collection_date | 2024-06-03 |
| collection_method | Urediniospores removed from surface of multiple leaves using Mini Cyclone Spore Collector |
| collector | Pearce, T |
| collector_sample_id | BBRB12 |
| common_name | Blueberry Rust |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio-HiFi |
| date_data_published | 27/09/2024 |
| date_of_transfer | 2024-09-20 |
| date_of_transfer_to_archive | 2024-09-26 |
| decimal_latitude_public | -41.110349 |
| decimal_longitude_public | 146.009549 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1690 |
| experimental_design | 13.1.0.221970 |
| facility | AGRF |
| facility_project_code | CAGRF24050038 |
| facility_sample_id | 395844 |
| family | Pucciniastraceae |
| fast5_compression | NA |
| flowcell_id | m84073_240914_195849_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240919_PP_AGRF_CAGRF24050038_m84073_240914_195849_s4 |
| genus | Pucciniastrum |
| host_common_name | Blueberry |
| host_family | Ericaceae |
| host_organ | leaves |
| host_scientific_name | Vaccinium corymbosum |
| host_status | Cultivated perrrenial |
| host_symptom | Black spots/rust pustules |
| insert_size_range | 12800.0 |
| isolate | BBR12 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 398106 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2024-08-14 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| location_info_restricted | No |
| location_text | Commerical Blueberry Orchard Block 12 |
| material_conc_ng_ul | 100.0 |
| material_extracted_by | Tamieka Pearce | University of Tasmania |
| material_extraction_date | 2024-06-14 |
| material_extraction_method | Rust spores sucked from leaves, ground in liquid N with sand, extracted with Qiagen genome kit |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 33.0 |
| order | Pucciniales |
| phylum | Basidiomycota |
| project_lead | Tamieka Pearce | University of Tasmania |
| sample_collection_type | Herbarium |
| sample_custodian | Tamieka Pearce | University of Tasmania |
| sample_id | 395844 |
| sample_type | Rust pustules on blueberry leaves (mixed culture) |
| scientific_name | Pucciniastrum minimum |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | minimum |
| specimen_custodian | NSW Department of Primary Industries and Regional Development (DAR) |
| specimen_id | DAR 76590 |
| specimen_id_description | NSW Department of Primary Industries and Regional Development (DAR) |
| state_or_region | Sulphur Creek, Tasmania |
| taxon_id | 761846 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1690 |
| tissue | Leaf abaxial epidermis |
| tissue_preservation | Pressed and dried |
| tissue_preservation_temperature | Room temperature |
| wild_captive | Wild |
| work_order | 20048 |