Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395839
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj045 |
| Access Control Date | 2025-07-04 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1606/20240703_PP_AGRF_CAGRF24040395_m84073_240628_102757_s3/ |
| bioplatforms_dataset_id | 102.100.100/399054 |
| bioplatforms_library_id | 102.100.100/398100 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP045_P_brassicae |
| bioplatforms_sample_id | 102.100.100/395839 |
| ccg_jira_ticket | BPAOPS-1606 |
| cell_postion | C01 |
| class | Phytomyxea |
| collection_date | 2023-11-28 |
| collector | Subhashini Marri |
| common_name | Clubroot |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio-HiFi |
| date_data_published | 05/07/2024 |
| date_of_transfer | 2024-07-04 |
| date_of_transfer_to_archive | 2024-07-05 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1606 |
| experimental_design | 13.1.0.221970 |
| facility | AGRF |
| facility_project_code | CAGRF24040395 |
| facility_sample_id | 395839 |
| family | Plasmodiophoridae |
| fast5_compression | NA |
| flowcell_id | m84073_240628_102757_s3 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240703_PP_AGRF_CAGRF24040395_m84073_240628_102757_s3 |
| genus | Plasmodiophora |
| health_state | disease |
| host_common_name | Spider mustard |
| host_family | Brassicaceae |
| host_organ | Roots |
| host_scientific_name | Brassica juncea var. japonica |
| host_status | Cultivated crop |
| host_symptom | Galling |
| insert_size_range | 9000.0 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 398100 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2024-06-10 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| life_stage | unknown |
| location_info_restricted | yes |
| location_text | Maffra |
| material_conc_ng_ul | 300.0 |
| material_extracted_by | Maxim Prokchorchik | University of Sydney |
| material_extraction_date | 2024-04-22 |
| material_extraction_method | Spore purification / CTAB-extraction |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 3.0 |
| order | Plasmodiophorida |
| phylum | Endomyxa |
| project_lead | Maxim Prokchorchik | University of Sydney |
| sample_collection_type | University |
| sample_custodian | Maxim Prokchorchik | University of Sydney |
| sample_id | 395839 |
| sample_type | Field isolate |
| scientific_name | Plasmodiophora brassicae |
| scientific_name_authorship | Woronin (1877) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | brassicae |
| specimen_custodian | Maxim Prokchorchik | University of Sydney |
| specimen_id | VIC2 |
| specimen_id_description | Maxim Prokchorchik | University of Sydney |
| state_or_region | Victoria |
| taxon_id | 37360 |
| taxonomic_group | Protist |
| ticket | BPAOPS-1606 |
| type_status | unknown |