Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395570
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj026 |
| Access Control Date | 2025-08-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1663/20240822_PP_AGRF_CAGRF24020140_m84073_240816_063353_s4/ |
| bioplatforms_dataset_id | 102.100.100/399043 |
| bioplatforms_library_id | 102.100.100/397824 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP026_Foc |
| bioplatforms_sample_id | 102.100.100/395570 |
| ccg_jira_ticket | BPAOPS-1663 |
| cell_postion | A01 |
| class | Sordariomycetes |
| collection_date | 2015-05-20 |
| collector | Grice, K.R. |
| country | Australia |
| data_context | Genomics |
| data_type | Long read |
| date_data_published | 27/08/2024 |
| date_of_transfer | 2024-08-26 |
| date_of_transfer_to_archive | 2024-08-27 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1663 |
| experimental_design | 13.1.0.221970 |
| facility | AGRF |
| facility_project_code | CAGRF24020140 |
| facility_sample_id | 395570 |
| family | Nectriaceae |
| fast5_compression | NA |
| flowcell_id | m84073_240816_063353_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240822_PP_AGRF_CAGRF24020140_m84073_240816_063353_s4 |
| genus | Fusarium |
| host_common_name | Banana |
| host_family | Musaceae |
| host_organ | Pseudostem and corm |
| host_scientific_name | Musa acuminata |
| host_status | Crop species |
| host_symptom | Yellowing, wilting, death |
| insert_size_range | 10600.0 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 397824 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2024-07-14 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| material_conc_ng_ul | 250.0 |
| material_extracted_by | Keith Lim | Qld Department of Agriculture and Fisheries |
| material_extraction_date | 2024-04-30 |
| material_extraction_method | Qiagen Genomic Tips |
| material_extraction_type | HMW gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 33.0 |
| order | Hypocereales |
| phylum | Ascomycota |
| project_lead | Tuan Nguyen | Queensland Department of Agriculture and Fisheries (QDAF) |
| sample_collection_type | Herbarium |
| sample_custodian | Yu Pei Tan | Queensland Department of Agriculture and Fisheries |
| sample_id | 395570 |
| sample_type | Cultured, whole organism |
| scientific_name | Fusarium oxysporum forma specialis cubense |
| scientific_name_authorship | (E.F. Sm.) W.C. Snyder & H.N. Hansen, 1940 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | oxysporum |
| specimen_custodian | Qld DAF Plant Pathology Herbarium |
| specimen_id | BRIP 63370 |
| specimen_id_description | Queensland Plant Pathogen Herbarium |
| state_or_region | Queensland |
| taxon_id | 1229664 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1663 |
| tissue | vascular |
| work_order | 20044 |