Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395565
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This dataset is currently under a short embargo period until November 20, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:560:pp-prj038 |
| Access Control Date | 2025-11-20 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| ancillary_notes | Plate 01; Well A01 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1582/20240503_PP_AGRF_CAGRF230715544_m84073_240426_042816_s2/ |
| bioplatforms_dataset_id | 102.100.100/399042 |
| bioplatforms_library_id | 102.100.100/397819 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP038_R_solani |
| bioplatforms_sample_id | 102.100.100/395565 |
| ccg_jira_ticket | BPAOPS-1582 |
| cell_postion | B01 |
| class | Agaricomycetes |
| collection_date | 2011-06-01 |
| collector | Xhaoxiang. C. |
| common_name | Rhizoctonia root rot |
| country | Australia |
| data_context | Genomics |
| data_type | Long read |
| date_data_published | 10/05/2024 |
| date_of_transfer | 2024-05-09 |
| date_of_transfer_to_archive | 2024-05-09 |
| decimal_latitude_public | -30.4 |
| decimal_longitude_public | 116.66667 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1582 |
| experimental_design | 13.1.0.221970 |
| facility | AGRF |
| facility_project_code | CAGRF230715544 |
| facility_sample_id | 395565 |
| family | Ceratobasidiaceae |
| fast5_compression | NA |
| flowcell_id | m84073_240426_042816_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240503_PP_AGRF_CAGRF230715544_m84073_240426_042816_s2 |
| genus | Rhizoctonia |
| host_common_name | Wheat |
| host_family | Poaceae |
| host_organ | Root |
| host_scientific_name | Triticum aestivum |
| host_status | Cereal crop |
| host_symptom | Roots of affected plants are short with characteristic pinched ends |
| insert_size_range | 10700.0 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 397819 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2024-04-22 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| location_text | Pithara |
| material_conc_ng_ul | 146.0 |
| material_extracted_by | Esther Walker |
| material_extraction_date | 2024-03-29 |
| material_extraction_method | Promega Wizard® HMW DNA Extraction Kit |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Cantharellales |
| phylum | Basidiomycota |
| project_lead | Manisha Shankar | DPIRD |
| sample_collection_type | Herbarium |
| sample_custodian | Daniel Huberli | DPIRD |
| sample_id | 395565 |
| scientific_name | Rhizoctonia solani AG8 |
| scientific_name_authorship | J.G. Kühn, 1858 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | solani |
| specimen_custodian | Plant Pathology Culture Collection, Western Australia (WAC) |
| specimen_id | WAC13585 |
| specimen_id_description | Plant Pathology Culture Collection, Western Australia (WAC) |
| state_or_region | WA |
| sub_species | Anastomosis group AG8 |
| taxon_id | 1287688 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1582 |