Plant Pathogen, Genomics, PacBio HiFi, Sample ID 395565
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:560:pp-prj038 |
| Access Control Date | 2025-11-20 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| ancillary_notes | Plate 01; Well A01 |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1582/20240503_PP_AGRF_CAGRF230715544_m84073_240426_042816_s2/ |
| bioplatforms_dataset_id | 102.100.100/399042 |
| bioplatforms_library_id | 102.100.100/397819 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP038_R_solani |
| bioplatforms_sample_id | 102.100.100/395565 |
| ccg_jira_ticket | BPAOPS-1582 |
| cell_postion | B01 |
| class | Agaricomycetes |
| collection_date | 2011-06-01 |
| collector | Xhaoxiang. C. |
| common_name | Rhizoctonia root rot |
| country | Australia |
| data_context | Genomics |
| data_type | Long read |
| date_data_published | 10/05/2024 |
| date_of_transfer | 2024-05-09 |
| date_of_transfer_to_archive | 2024-05-09 |
| decimal_latitude_public | -30.4 |
| decimal_longitude_public | 116.66667 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1582 |
| experimental_design | 13.1.0.221970 |
| facility | AGRF |
| facility_project_code | CAGRF230715544 |
| facility_sample_id | 395565 |
| family | Ceratobasidiaceae |
| fast5_compression | NA |
| flowcell_id | m84073_240426_042816_s2 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20240503_PP_AGRF_CAGRF230715544_m84073_240426_042816_s2 |
| genus | Rhizoctonia |
| host_common_name | Wheat |
| host_family | Poaceae |
| host_organ | Root |
| host_scientific_name | Triticum aestivum |
| host_status | Cereal crop |
| host_symptom | Roots of affected plants are short with characteristic pinched ends |
| insert_size_range | 10700.0 |
| library_comments | NA |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell® prep kit 3.0 |
| library_id | 397819 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2024-04-22 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| location_text | Pithara |
| material_conc_ng_ul | 146.0 |
| material_extracted_by | Esther Walker |
| material_extraction_date | 2024-03-29 |
| material_extraction_method | Promega Wizard® HMW DNA Extraction Kit |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Cantharellales |
| phylum | Basidiomycota |
| project_lead | Manisha Shankar | DPIRD |
| sample_collection_type | Herbarium |
| sample_custodian | Daniel Huberli | DPIRD |
| sample_id | 395565 |
| scientific_name | Rhizoctonia solani AG8 |
| scientific_name_authorship | J.G. Kühn, 1858 |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | solani |
| specimen_custodian | Plant Pathology Culture Collection, Western Australia (WAC) |
| specimen_id | WAC13585 |
| specimen_id_description | Plant Pathology Culture Collection, Western Australia (WAC) |
| state_or_region | WA |
| sub_species | Anastomosis group AG8 |
| taxon_id | 1287688 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1582 |