Plant Pathogen, Genomics, PacBio HiFi, Sample ID 394907
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj014 |
| Access Control Date | 2024-11-29 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link Analysis |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/pacbio-hifi/BPAOPS-1528/20231129_PP_AGRF_CAGRF230313993_m84073_231123_073845_s4/ |
| bioplatforms_dataset_id | 102.100.100/399026 |
| bioplatforms_library_id | 102.100.100/397161 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP014_PectoNSW |
| bioplatforms_sample_id | 102.100.100/394907 |
| ccg_jira_ticket | BPAOPS-1528 |
| cell_postion | D01 |
| class | Gammaproteobacteria |
| country | Australia |
| data_context | Genomics |
| data_type | PacBio |
| date_data_published | 30/11/2023 |
| date_of_transfer | 2023-11-30 |
| date_of_transfer_to_archive | 2023-12-01 |
| description | PacBio-HiFi |
| dna_treatment | SHEARING |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1528 |
| experimental_design | 12.0.0.172289 |
| facility | AGRF |
| facility_sample_id | 394907 |
| family | Pectobacteriaceae |
| fast5_compression | NA |
| flowcell_id | m84073_231123_073845_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20231129_PP_AGRF_CAGRF230313993_m84073_231123_073845_s4 |
| genus | Dickeya |
| insert_size_range | 7000.0 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_id | 397161 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-11-04 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| material_conc_ng_ul | 183.0 |
| material_extracted_by | Fridtjof Snijders | NSW Departement of Primary Industries |
| material_extraction_date | 2023-04-01 |
| material_extraction_method | Nanobind CBB lit RT |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| model_base_caller | NA |
| movie_length | 24Hrs |
| n_libraries_pooled | 1.0 |
| order | Enterobacterales |
| phylum | Pseudomonadota |
| project_lead | Toni Chapman | NSW DPI |
| sample_collection_type | Herbarium |
| sample_id | 394907 |
| scientific_name | Dickeya chrysanthemi |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | chrysanthemi |
| specimen_custodian | NSW Plant Pathology & Mycology Herbarium |
| specimen_id | DAR41367 |
| taxonomic_group | Bacteria |
| ticket | BPAOPS-1528 |