Plant Pathogen, Genomics, Illumina Shortread, Sample ID 396001

Eutypella sp. nov, Linda Smith | Department of Primary Industries and Fisheries

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Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj025
Access Control Date 2025-01-09
Access Control Mode date
Sequence Data Type illumina-shortread
analysis_software NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3
associated_media none
base_url https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1736/20250110_PP_AGRF_CAGRF24090021_2_22VJFMLT3/
bioplatforms_dataset_id 102.100.100/399070
bioplatforms_library_id 102.100.100/398402
bioplatforms_project Plant Pathogen Initiative
bioplatforms_project_code PP025_Eutypella
bioplatforms_sample_id 102.100.100/396001
ccg_jira_ticket BPAOPS-1736
class Sordariomycetes
collection_date 2020-01-28
collection_method https://doi.org/10.1007/s13313-021-00843-8
collector Smith, L. and Kafle, D.
collector_sample_id 23188.0
coord_uncertainty_metres 5.0
country Australia
data_context Genomics
data_type Short read
date_data_published 13/01/2025
date_of_transfer 2024-01-10
date_of_transfer_to_archive 2024-01-10
description Illumina Short read
download https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1736
facility AGRF
facility_project_code CAGRF24090021
facility_sample_id 18169-2
family Diatrypaceae
flowcell_id 22VJFMLT3
flowcell_type 10B-300
folder_name 20250110_PP_AGRF_CAGRF24090021_2_22VJFMLT3
genus Eutypella
health_state Dead due to disease
host_common_name Cotton
host_family Malvaceae
host_organ root and stem
host_scientific_name Gossypium hirsutum
host_status Commercial cotton
host_symptom Plant death, internal wedge-shaped discolouration, dry rottong roots.
insert_size_range 494.0
isolate 23188.0
library_construction_protocol PCR-FREE
library_id 398402
library_index_seq_dual UDP0040-F & UDP0040-R
library_layout Paired-End
library_location AGRF Melbourne
library_ng_ul 0.237
library_oligo_sequence_dual TATGTAGTCA-CGCACTAATG
library_pcr_cycles 13
library_prep_date 2024-12-17
library_prepared_by JL
library_source DNA
library_type DNA
life_stage Open boll
location_info_restricted yes
location_text Cotton field, Moura, central Queensland
material_conc_ng_ul 18ng/ul
material_extracted_by Joy Conroy / Department of Agriculture and Fisheries
material_extraction_date 2024-08-05
material_extraction_method DNA extractions were done following the protocol for Isolate II Plant DNA kit (Meridian Bioscience).
material_extraction_type gDNA
metadata_revision_date 2025-06-20
metadata_revision_filename 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx
order Xylariales
phylum Ascomycota
project_lead Linda Smith | Department of Primary Industries and Fisheries
sample_collection_type Living collection
sample_custodian Linda Smith / Department of Agriculture and Fisheries
sample_type Culture plugs stored under water
scientific_name Eutypella sp. nov
scientific_name_authorship Smith L, Greenfield P, Kafle D, Conroy J, Scheikowski L and Vadakattu G (2021)
sequencing_facility AGRF
sequencing_kit_chemistry_version XLEAP SBS
sequencing_model X Plus
sequencing_platform NovaSeq
species novel sp. 2
specimen_custodian Department of Agriculture and Fisheries Queensland Plant Pathology Herbarium (BRIP)
specimen_id BRIP 70529 c
specimen_id_description Department of Agriculture and Fisheries, Queensland,Plant Pathology Herbarium (BRIP)
state_or_region Queensland
taxon_id 1715228
taxonomic_group Fungi
ticket BPAOPS-1736
tissue Vascular
type_status unknown
wild_captive Cultivated