Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395982
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj045 |
| Access Control Date | 2025-08-22 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1662/20240826_PP_AGRF_CAGRF24080104_22N2CNLT3/ |
| bioplatforms_dataset_id | 102.100.100/399064 |
| bioplatforms_library_id | 102.100.100/398261 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP045_P_brassicae |
| bioplatforms_sample_id | 102.100.100/395982 |
| ccg_jira_ticket | BPAOPS-1662 |
| class | Phytomyxea |
| collection_date | 1965-10-11 |
| collector | Sharman, J. |
| common_name | Clubroot |
| country | Australia |
| data_context | Genomics |
| data_type | Short read |
| date_data_published | 27/08/2024 |
| date_of_transfer | 2024-08-22 |
| date_of_transfer_to_archive | 2024-08-27 |
| description | Illumina Short Read - dataset 2 |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1662 |
| facility | AGRF |
| facility_project_code | CAGRF24080104 |
| facility_sample_id | 16527-5 |
| family | Plasmodiophoridae |
| flowcell_id | 22N2CNLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240826_PP_AGRF_CAGRF24080104_22N2CNLT3 |
| genus | Plasmodiophora |
| host_family | Brassicaceae |
| host_organ | Root |
| host_scientific_name | Sinapis alba |
| host_symptom | Galling |
| insert_size_range | 295.0 |
| library_construction_protocol | IDT xGen Prism |
| library_id | 398261 |
| library_index_seq_dual | 7-359 & 5-311 |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 30.2708122043 |
| library_oligo_sequence_dual | CCCTTCGG-CTGCCTTC |
| library_prepared_by | BP |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_text | Finley |
| material_conc_ng_ul | 40.0 |
| material_extracted_by | Maxim Prokchorchik | University of Sydney |
| material_extraction_date | 2024-05-02 |
| material_extraction_method | Spore isolation the CTAB gDNA extraction |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| order | Plasmodiophorida |
| phylum | Endomyxa |
| project_lead | Maxim Prokchorchik | University of Sydney |
| sample_collection_type | Herbarium |
| sample_custodian | Maxim Prokchorchik | University of Sydney |
| sample_type | Dried diseased plants |
| scientific_name | Plasmodiophora brassicae |
| scientific_name_authorship | Woronin (1877) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | brassicae |
| specimen_custodian | NSW Plant Pathology & Mycology Herbarium |
| specimen_id | DAR15458 |
| specimen_id_description | NSW Plant Pathology & Mycology Herbarium |
| state_or_region | New South Wales |
| taxon_id | 37360 |
| taxonomic_group | Protist |
| ticket | BPAOPS-1662 |