Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395971

Phaeosphaeria avenae f.sp. avenae, Tara Garrard | SARDI

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj029
Access Control Date 2025-07-16
Access Control Mode date
Sequence Data Type illumina-shortread
analysis_software NovaSeq Control Software (NCS) 1.2.0.28691; Real Time Analysis (RTA) v4.6.7; Illumina DRAGEN BCL Convert 07.021.645.4.0.3
ancillary_notes S26
base_url https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1621/20240716_PP_AGRF_CAGRF24050289_22CY5KLT4/
bioplatforms_dataset_id 102.100.100/399061
bioplatforms_library_id 102.100.100/398233
bioplatforms_project Plant Pathogen Initiative
bioplatforms_project_code PP029_P_avenaria
bioplatforms_sample_id 102.100.100/395971
ccg_jira_ticket BPAOPS-1621
class Dothideomycetes
collection_date 2023-10-01
collector Hieu Tran
common_name Oat septoria blotch
country Australia
data_context Genomics
data_type Illumina short read
date_data_published 29/07/2024
date_of_transfer 2024-07-16
date_of_transfer_to_archive 2024-07-17
description Illumina Short Read
download https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1621
facility AGRF
facility_project_code CAGRF24050289
facility_sample_id 16792-14
family Phaeosphaeriaceae
flowcell_id 22CY5KLT4
flowcell_type 25B-300
folder_name 20240716_PP_AGRF_CAGRF24050289_22CY5KLT4
genus Phaeosphaeria
host_common_name Oat
host_family Poaceae
host_organ Leaf
host_scientific_name Avena sativa
host_status Cereal crop
host_symptom Leaf blotch
insert_size_range 450 bp ± 75 bp
library_construction_protocol Illumina DNA Prep PCR-Free
library_id 398233
library_index_seq_dual UDP0158-F & UDP0158-R
library_layout Paired-End
library_location AGRF Melbourne
library_ng_ul 1.5
library_oligo_sequence_dual CGATGCGGTT-CCTGCTTGGT
library_prep_date 2024-07-03
library_prepared_by EB
library_selection PCR-Free Tagmentation
library_source DNA
library_strategy Whole-genome Sequencing
library_type WGS
location_text Narrogin
material_conc_ng_ul 26.8
material_extracted_by Hieu Tran, DPIRD
material_extraction_date 2024-05-29
material_extraction_method DNeasy Plant Mini Kit Qiagen
material_extraction_type gDNA
metadata_revision_date 2025-06-20
metadata_revision_filename 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx
order Pleosporales
phylum Ascomycota
project_lead Tara Garrard | SARDI
sample_collection_type Herbarium
sample_custodian Manisha Shankar | DPIRD
scientific_name Phaeosphaeria avenae f.sp. avenae
scientific_name_authorship O.E. Erikss., (1967)
sequencing_facility AGRF
sequencing_kit_chemistry_version XLEAP SBS
sequencing_model X Plus
sequencing_platform NovaSeq
species avenae
specimen_custodian Plant Pathology Culture Collection, Western Australia (WAC)
specimen_id WAC15813
specimen_id_description Plant Pathology Culture Collection, Western Australia (WAC)
state_or_region WA
sub_species f.sp. avenae
taxonomic_group Fungi
ticket BPAOPS-1621
work_order WO20055