Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395903
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until March 16, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
-
395903_LibID398165_PP_AGRF_22N3J... Metadata Only FASTQ
-
395903_LibID398165_PP_AGRF_22N3J... Metadata Only FASTQ
-
395903_LibID398165_PP_AGRF_22N3J... Metadata Only FASTQ
-
395903_LibID398165_PP_AGRF_22N3J... Metadata Only FASTQ
-
395903_LibID398165_PP_AGRF_22N3J... Metadata Only FASTQ
-
395903_LibID398165_PP_AGRF_22N3J... Metadata Only FASTQ
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:560:pp-prj027 |
| Access Control Date | 2026-03-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| ancillary_notes | F4 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1668/20240902_PP_AGRF_CAGRF24050287_1_22N3JVLT3/ |
| bioplatforms_dataset_id | 102.100.100/399059 |
| bioplatforms_library_id | 102.100.100/398165 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP027_F_crownrot |
| bioplatforms_sample_id | 102.100.100/395903 |
| ccg_jira_ticket | BPAOPS-1668 |
| class | Sordariomycetes |
| collection_date | 2013-12-01 |
| collector | Miriam Connor and SARDI |
| common_name | Crown rot |
| country | Australia |
| data_context | Genomics |
| data_type | Short read |
| date_data_published | 05/09/2024 |
| date_of_transfer | 2024-09-02 |
| date_of_transfer_to_archive | 2024-09-05 |
| description | Illumina Short read - datset 2 |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1668 |
| facility | AGRF |
| facility_project_code | CAGRF24050287-1 |
| facility_sample_id | 16794-4 |
| family | Nectriaceae |
| flowcell_id | 22N3JVLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240902_PP_AGRF_CAGRF24050287_1_22N3JVLT3 (18 samples) |
| genus | Fusarium |
| host_common_name | Wheat |
| host_family | Poaceae |
| host_organ | Crown |
| host_scientific_name | Triticum aestivum |
| host_status | Cereal crop |
| host_symptom | Rotting of crown tissue and lower stem internodes, lesions on subcrown internodes, and premature death of inflorescens (whiteheads). |
| insert_size_range | 447.0 |
| library_construction_protocol | Illumina DNA PCR-Free |
| library_id | 398165 |
| library_index_seq_dual | UDP0149-F & UDP0149-R |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.79 |
| library_oligo_sequence_dual | GATTCTGAAT-AGCGGTGGAC |
| library_prep_date | 2024-07-15 |
| library_prepared_by | JL |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_text | Jerramungup |
| material_conc_ng_ul | 69.0 |
| material_extracted_by | Hieu Tran, DPIRD |
| material_extraction_date | 2024-05-15 |
| material_extraction_method | DNeasy Plant Mini Kit Qiagen |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| order | Hypocreales |
| phylum | Ascomycota |
| project_lead | Manisha Shankar | DPIRD |
| sample_collection_type | Herbarium |
| sample_custodian | Daniel Huberli | DPIRD |
| scientific_name | Fusarium pseudograminearum |
| scientific_name_authorship | O'Donnell & T. Aoki |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | pseudograminearum |
| specimen_custodian | Plant Pathology Culture Collection, Western Australia (WAC) |
| specimen_id | WAC15833 |
| specimen_id_description | Plant Pathology Culture Collection, Western Australia (WAC) |
| state_or_region | WA |
| taxon_id | 101028 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1668 |