Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395849
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until January 27, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
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395849_LibID398111_PP_AGRF_22CY5... Metadata Only FASTQ
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:560:pp-prj023 |
| Access Control Date | 2026-01-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) 1.2.0.28691; Real Time Analysis (RTA) v4.6.7; Illumina DRAGEN BCL Convert 07.021.645.4.0.3 |
| ancillary_notes | C5 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1619/20240716_PP_AGRF_CAGRF24050284_22CY5KLT4/ |
| bioplatforms_dataset_id | 102.100.100/399057 |
| bioplatforms_library_id | 102.100.100/398111 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP023_C_lupini |
| bioplatforms_sample_id | 102.100.100/395849 |
| ccg_jira_ticket | BPAOPS-1619 |
| class | Sordariomycetes |
| collection_date | 1996-10-11 |
| collector | Wood, P. M. |
| common_name | Lupin anthracnose |
| country | Australia |
| data_context | Genomics |
| data_type | Short read |
| date_data_published | 29/07/2024 |
| date_of_transfer | 2024-07-16 |
| date_of_transfer_to_archive | 2024-07-17 |
| description | Illumina Short Read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1619 |
| facility | AGRF |
| facility_project_code | CAGRF24050284 |
| facility_sample_id | 16731-5 |
| family | Glomerellaceae |
| flowcell_id | 22CY5KLT4 |
| flowcell_type | 25B-300 |
| folder_name | 20240716_PP_AGRF_CAGRF24050284_22CY5KLT4 |
| genus | Colletotrichum |
| host_common_name | Lupin |
| host_family | Fabaceae |
| host_organ | Stem/Pod |
| host_scientific_name | Lupinus angustifolius |
| host_status | Pulse crop |
| host_symptom | necrotic lesions on leaves, stems and pods |
| insert_size_range | 450 bp ± 75 bp |
| library_construction_protocol | Illumina DNA Prep PCR-Free |
| library_id | 398111 |
| library_index_id_dual | UDP0113-F & UDP0113-R |
| library_index_seq_dual | GAATTACAAG-ACCGGCTCAG |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.04 |
| library_prep_date | 2024-07-03 |
| library_prepared_by | EB |
| library_selection | PCR-Free Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_text | Three Springs |
| material_conc_ng_ul | 76.1 |
| material_extracted_by | Hieu Tran / DPIRD |
| material_extraction_date | 2024-05-01 |
| material_extraction_method | DNeasy Plant Mini Kit Qiagen |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| order | Glomerellales |
| phylum | Ascomycota |
| project_lead | Manisha Shankar | DPIRD |
| sample_collection_type | Herbarium |
| sample_custodian | Geoff Thomas | DPIRD |
| scientific_name | Colletotrichum lupini |
| scientific_name_authorship | (Bondar) Damm, P.F. Cannon & Crous |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | lupini |
| specimen_custodian | Plant Pathology Culture Collection, Western Australia (WAC) |
| specimen_id | WAC10445 |
| specimen_id_description | Plant Pathology Culture Collection, Western Australia (WAC) |
| state_or_region | WA |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1619 |
| work_order | WO20051 |