Plant Pathogen, Genomics, Illumina Shortread, Sample ID 395534
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:560:pp-prj027 |
| Access Control Date | 2026-03-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.6 |
| ancillary_notes | F25 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1670/20240902_PP_AGRF_CAGRF24050287_2_22N3JVLT3/ |
| bioplatforms_dataset_id | 102.100.100/399059 |
| bioplatforms_library_id | 102.100.100/398151 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP027_F_crownrot |
| bioplatforms_sample_id | 102.100.100/395534 |
| ccg_jira_ticket | BPAOPS-1670 |
| class | Sordariomycetes |
| collection_date | 2013-12-01 |
| collector | Miriam Connor |
| common_name | Crown rot |
| country | Australia |
| data_context | Genomics |
| data_type | Short read |
| date_data_published | 05/09/2024 |
| date_of_transfer | 2024-09-02 |
| date_of_transfer_to_archive | 2024-09-05 |
| decimal_latitude_public | -30.13 |
| decimal_longitude_public | 116.984 |
| description | Illumina Short read - datset 4 |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1670 |
| facility | AGRF |
| facility_project_code | CAGRF24050287-2 |
| facility_sample_id | 17031-5 |
| family | Nectriaceae |
| flowcell_id | 22N3JVLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240902_PP_AGRF_CAGRF24050287_2_22N3JVLT3 (13 samples) |
| genus | Fusarium |
| host_common_name | Wheat |
| host_family | Poaceae |
| host_organ | Crown |
| host_scientific_name | Triticum aestivum |
| host_status | Cereal crop |
| host_symptom | Rotting of crown tissue and lower stem internodes, lesions on subcrown internodes, and premature death of inflorescens (whiteheads). |
| insert_size_range | 448.0 |
| library_construction_protocol | Illumina DNA PCR-Free |
| library_id | 398151 |
| library_index_seq_dual | UDP0142-F & UDP0142-R |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.04 |
| library_oligo_sequence_dual | ACAACTACTG-AGTTATCACA |
| library_prep_date | 2024-07-25 |
| library_prepared_by | JL |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_text | Dalwallinu |
| material_conc_ng_ul | 60.5 |
| material_extracted_by | Hieu Tran, DPIRD |
| material_extraction_date | 2024-05-15 |
| material_extraction_method | DNeasy Plant Mini Kit Qiagen |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| order | Hypocreales |
| phylum | Ascomycota |
| project_lead | Manisha Shankar | DPIRD |
| sample_collection_type | Herbarium |
| sample_custodian | Daniel Huberli | DPIRD |
| scientific_name | Fusarium pseudograminearum |
| scientific_name_authorship | O'Donnell & T. Aoki |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | pseudograminearum |
| specimen_custodian | Plant Pathology Culture Collection, Western Australia (WAC) |
| specimen_id | WAC15286 |
| specimen_id_description | Plant Pathology Culture Collection, Western Australia (WAC) |
| state_or_region | WA |
| taxon_id | 101028 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1670 |