Plant Pathogen, Genomics, Illumina Shortread, Sample ID 394711
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj016 |
| Access Control Date | 2025-05-28 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.1.0.18335; Real Time Analysis (RTA) v4.6.2; Illumina DRAGEN BCL Convert 07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1591/20240528_PP_AGRF_CAGRF221112830_22KMGTLT3/ |
| bioplatforms_dataset_id | 102.100.100/399018 |
| bioplatforms_library_id | 102.100.100/396961 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP016_Pseudomona |
| bioplatforms_sample_id | 102.100.100/394711 |
| ccg_jira_ticket | BPAOPS-1591 |
| class | Gammaproteobacteria |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 11/06/2024 |
| date_of_transfer | 2024-05-28 |
| date_of_transfer_to_archive | 2024-05-29 |
| description | Illumina Short Read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1591 |
| facility | AGRF |
| facility_project_code | CAGRF221112830 |
| facility_sample_id | 15596-19 |
| family | Pseudomonadaceae |
| flowcell_id | 22KMGTLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240528_PP_AGRF_CAGRF221112830_22KMGTLT3 |
| genus | Pseudomonas |
| insert_size_range | 350 bp |
| library_construction_protocol | Illumina DNA Prep (M) |
| library_id | 396961 |
| library_index_id_dual | UDP0115-F & UDP0115-R |
| library_index_seq_dual | AGGCAGCTCT-CGGCTAACGT |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 6.89 |
| library_pcr_cycles | 5 |
| library_prep_date | 2024-04-24 |
| library_prepared_by | TUN |
| library_selection | PCR-based Tagmentation |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| material_extracted_by | Lauren Clackson | Fridtjof Snijders | NSW DPI |
| material_extraction_method | Qiagen Blood&Tissue |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| order | Pseudomonadales |
| phylum | Pseudomonadota |
| project_lead | Toni Chapman | NSW DPI |
| sample_collection_type | from -80 storage |
| sample_custodian | Toni Chapman |
| scientific_name | Pseudomonas syringae pv. tagetis |
| sequencing_facility | AGRF |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | syringae |
| specimen_custodian | NSW Department of Primary Industries |
| specimen_id | DAR26812 |
| sub_species | tagetis |
| ticket | BPAOPS-1591 |
| work_order | WO20005 |