Plant Pathogen, Genomics, Illumina Shortread, Sample ID 394596
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:pp-prj014 |
| Access Control Date | 2026-02-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/pp_staging/illumina-shortread/BPAOPS-1761/20250227_PP_AGRF_CAGRF221112829_3_22WVN5LT3/ |
| bioplatforms_dataset_id | 102.100.100/399017 |
| bioplatforms_library_id | 102.100.100/396846 |
| bioplatforms_project | Plant Pathogen Initiative |
| bioplatforms_project_code | PP014_PectoNSW |
| bioplatforms_sample_id | 102.100.100/394596 |
| ccg_jira_ticket | BPAOPS-1761 |
| class | Gammaproteobacteria |
| collection_date | 1988-02-01 |
| collector | Unknown |
| country | Australia |
| data_context | Genomics |
| data_type | Illumina short read |
| date_data_published | 27/02/2025 |
| date_of_transfer | 2025-02-27 |
| date_of_transfer_to_archive | 2025-02-26 |
| description | Illumina Short read (54 samples) |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1761 |
| facility | AGRF |
| facility_project_code | CAGRF221112829-3 |
| facility_sample_id | 18366-25 |
| family | Pectobacteriaceae |
| flowcell_id | 22WVN5LT3 |
| flowcell_type | 10B-300 |
| folder_name | 20250227_PP_AGRF_CAGRF221112829_3_22WVN5LT3 |
| genus | Dickeya |
| host_common_name | Water sample |
| host_organ | Water |
| host_symptom | from river |
| insert_size_range | 626.0 |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 396846 |
| library_index_seq_dual | UDP0235-F & UDP0235-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 4.6 |
| library_oligo_sequence_dual | CTCCACTAAT-TGTACTTGTT |
| library_pcr_cycles | 5 |
| library_prep_date | 2025-02-14 |
| library_prepared_by | EB |
| library_source | DNA |
| location_info_restricted | Adaminaby |
| material_extracted_by | Fridtjof Snijders | NSW DPIRD |
| material_extraction_date | 2024-11-01 |
| material_extraction_method | Qiagen Blood&Tissue or MagAttract Microbial DNA kit (KingFisher) |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-06-20 |
| metadata_revision_filename | 2025-04-08_Combined_Plant_Pathogen_sample_metadata_forQCIF_removelatlong.xlsx |
| order | Enterobacterales |
| phylum | Pseudomonadota |
| project_lead | Toni Chapman | NSW DPI |
| scientific_name | Dickeya zeae |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | zeae |
| specimen_custodian | NSW Department of Primary Industries |
| specimen_id | DAR64772 |
| specimen_id_description | NSW Plant Pathology & Mycology Herbarium |
| state_or_region | New South Wales |
| ticket | BPAOPS-1761 |