Serendipita, reference genome, illumina-transcriptomics, Root
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This dataset is currently under a short embargo period until August 25, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-08-25 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | NA |
| analysis_software | DRAGEN BCLConvert 4.3.16 |
| ancillary_notes | S46 |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1881/20250825-22F3JMLT1-WO21030/ |
| bioplatforms_dataset_id | 102.100.100/467826 |
| bioplatforms_library_id | 102.100.100/467573 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/465555 |
| ccg_jira_ticket | BPAOPS-1881 |
| cell_postion | N/A |
| class | Agaricomycetes |
| collection_date | 2015-10-10 |
| collection_method | Wild harvest |
| collection_permit | SL100294 |
| collector | Celeste Linde |
| common_name | Serendipita |
| country | Australia |
| data_context | reference genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-08-25 |
| date_of_transfer_to_archive | 2025-08-26 |
| depth | NA |
| dna_treatment | N/A |
| env_broad_scale | Woodland biome |
| env_local_scale | NA |
| env_medium | NA |
| experimental_design | N/A |
| facility_project_code | NA |
| facility_sample_id | 467573_FUN_BRF_22F3JMLT1_TGATTATACG-GTCGATTACA |
| family | Serendipitaceae |
| fast5_compression | N/A |
| flow_cell_id | library |
| flowcell_id | 22F3JMLT1 |
| flowcell_type | NovaSeq X Series 1.5B |
| folder_name | 20250825_FUN_BRF_467826_22F3JMLT1 |
| genus | Serendipita |
| habitat | NA |
| health_state | Healthy |
| host_common_name | Orchid |
| host_family | Orchidaceae |
| host_organ | Collar |
| host_scientific_name | Glossodia major |
| host_status | In vitro |
| host_symptom | Asymptomatic |
| identified_by | Celeste Linde |
| indigenous_location | Ngunnawal and Ngambri |
| insert_size_range | 400.0 |
| isolate | Serendipita CLM1993 -barley colonised roots |
| library_comments | N/A |
| library_construction_protocol | NEB Directional cDNA Prep, Illumina DNA Prep - Tagmentation |
| library_id | 467573 |
| library_index_id | UDP0033 |
| library_index_id_dual | UDP0033 |
| library_index_seq_dual | GTCGATTACA |
| library_index_sequence | TGATTATACG |
| library_layout | paired-end |
| library_location | BRF Freezer |
| library_ng_ul | 7.51 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATtgattatacgGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACAgtcgattacaTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | N/A |
| library_prepared_by | Lachlan Morrison |
| library_selection | N/A |
| library_source | Total RNA |
| library_strategy | Tagmentation |
| library_type | illumina-transcriptomics |
| life_stage | mature plant |
| location_info_restricted | Yes |
| location_text | Gossan Hill, Canberra |
| material_conc_ng_ul | 910.0 |
| material_extracted_by | Eric Perreira |
| material_extraction_date | 2025-06-01 |
| material_extraction_type | RNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 40.0 |
| order | Sebacinales |
| phylum | Basidiomycota |
| project_collaborators | Benjamin Schwessinger (ANU), Rod Peakall (ANU), Darren Wong (ANU) |
| project_lead | Celeste Linde |
| sample_collection_type | barley roots |
| sample_custodian | Celeste Linde |
| sample_id | Serendipita CLM1859 -barley colonised roots |
| sample_quality | Good |
| sample_type | plant and fungus tissue |
| scientific_name | Serendipita secunda |
| scientific_name_authorship | Oktalira, T.W. May $ C.C. Linde |
| scientific_name_note | Orchid Mycorrhizal Fungi |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| species | secunda |
| specimen_id | Serendipita CLM1859 -barley colonised roots |
| state_or_region | Australian Capitol Territory |
| sub_species | NA |
| taxonomic_group | Fungi+Plant |
| temperature | NA |
| ticket | BPAOPS-1881 |
| tissue | Root |
| tissue_preservation | Frozen |
| tissue_preservation_temperature | -80.0 |
| wild_captive | in vitro |
| work_order | 21030 |