Population genomics, Illumina-shortread, other (gills)
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-06-12 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | 914.6 |
| analysis_software | NovaSeq X Control Software v1.3.1.59007; Real Time Analysis v4.6.7; Dragen BCL Convert vt 07.031.732.4.3.6 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1796/20250612_FUN_AGRF_CAGRF25040451_233JLLLT3/ |
| bioplatforms_dataset_id | 102.100.100/467822 |
| bioplatforms_library_id | 102.100.100/467198 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/465146 |
| ccg_jira_ticket | BPAOPS-1796 |
| class | Agaricomycetes |
| collection_date | 2023-05-29 |
| collection_method | Hand collected |
| collection_permit | SL101386 |
| collector_sample_id | WP1023 |
| country | Australia |
| data_context | Population genomics |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-06-12 |
| date_of_transfer_to_archive | 2025-06-15 |
| env_broad_scale | Temperate rainforest; gully above creek |
| env_local_scale | slope above creek |
| facility_project_code | CAGRF25040451 |
| facility_sample_id | 19615-23 |
| family | Hygrophoraceae |
| flow_cell_id | 233JLLLT3 |
| flowcell_id | 233JLLLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20250612_FUN_AGRF_CAGRF25040451_233JLLLT3 |
| genus | Hygrocybe |
| host_common_name | Soil |
| host_family | NA |
| host_organ | NA |
| host_scientific_name | NA |
| host_status | NA |
| host_symptom | NA |
| insert_size_range | 315.0 |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 467198 |
| library_index_seq_dual | UDP0083-F & UDP0083-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.28 |
| library_oligo_sequence_dual | TATGCCTTAC-AGACACATTA |
| library_pcr_cycles | 5.0 |
| library_prep_date | 2025-06-03 |
| library_prepared_by | BX |
| library_source | DNA |
| library_type | Illumina-shortread |
| location_text | Waterfall Track, Mount Wilson |
| material_conc_ng_ul | 0.159 |
| material_extracted_by | Isobel Colson |
| material_extraction_method | Qiagen DNeasy plant mini kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| order | Agaricales |
| phylum | Basidiomycota |
| project_collaborators | NSW DPI Pathology and Mycology Herbarium |
| project_lead | Isobel Colson |
| sample_custodian | NSW DPI Pathology and Mycology Herbarium |
| sample_id | WP1023 |
| sample_type | DNA extract |
| scientific_name | Cuphophyllus aurantiopallens |
| scientific_name_authorship | (E. Horak) J.A. Cooper (2023) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | aurantiopallens |
| specimen_custodian | NSW DPI Pathology and Mycology Herbarium |
| specimen_id | DAR 87018 |
| specimen_id_description | Hygrocybe aurantiopallens |
| state_or_region | New South Wales |
| taxonomic_group | fungi |
| ticket | BPAOPS-1796 |
| tissue | other (gills) |
| tissue_preservation | Dried |
| tissue_preservation_temperature | 40.0 |
| work_order | 21027 |