Population genomics, Illumina-shortread, other (gills)
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This dataset is currently under a short embargo period until June 12, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-06-12 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | 67.2 |
| analysis_software | NovaSeq X Control Software v1.3.1.59007; Real Time Analysis v4.6.7; Dragen BCL Convert vt 07.031.732.4.3.6 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1796/20250612_FUN_AGRF_CAGRF25040451_233JLLLT3/ |
| bioplatforms_dataset_id | 102.100.100/467822 |
| bioplatforms_library_id | 102.100.100/467188 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/465136 |
| ccg_jira_ticket | BPAOPS-1796 |
| class | Agaricomycetes |
| collection_date | 2024-06-26 |
| collection_method | Hand collected |
| collection_permit | SL102895 |
| collector | Isobel Colson |
| collector_sample_id | LC250624_09 |
| country | Australia |
| data_context | Population genomics |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-06-12 |
| date_of_transfer_to_archive | 2025-06-15 |
| env_broad_scale | Temperate rainforest; gully above creek |
| facility_project_code | CAGRF25040451 |
| facility_sample_id | 19615-13 |
| family | Hygrophoraceae |
| flow_cell_id | 233JLLLT3 |
| flowcell_id | 233JLLLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20250612_FUN_AGRF_CAGRF25040451_233JLLLT3 |
| genus | Hygrocybe |
| habitat | Base of acmena smithii canopy cover 80 per cent, in open mossy slope |
| host_common_name | Soil |
| host_family | NA |
| host_organ | NA |
| host_scientific_name | NA |
| host_status | NA |
| host_symptom | NA |
| identified_by | Isobel Colson |
| insert_size_range | 374.0 |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 467188 |
| library_index_seq_dual | UDP0073V3-F & UDP0073V3-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 2.6 |
| library_oligo_sequence_dual | TCTCATGATA-AACACGTGGA |
| library_pcr_cycles | 5.0 |
| library_prep_date | 2025-06-03 |
| library_prepared_by | BX |
| library_source | DNA |
| library_type | Illumina-shortread |
| location_text | Lane Cove Bushland Park, Chatswood |
| material_extracted_by | Isobel Colson |
| material_extraction_date | 2025-03-14 |
| material_extraction_method | Qiagen DNeasy plant mini kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| order | Agaricales |
| phylum | Basidiomycota |
| project_collaborators | NSW DPI Pathology and Mycology Herbarium |
| project_lead | Isobel Colson |
| sample_custodian | NSW DPI Pathology and Mycology Herbarium |
| sample_id | LC250624_09 |
| sample_type | DNA extract |
| scientific_name | Hygrocybe collucera |
| scientific_name_authorship | A.M. Young, R. Kearney & E. Kearney (2001) |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| species | collucera |
| specimen_custodian | NSW DPI Pathology and Mycology Herbarium |
| specimen_id | DAR 87022 |
| specimen_id_description | Hygrocybe collucera |
| state_or_region | New South Wales |
| taxonomic_group | fungi |
| ticket | BPAOPS-1796 |
| tissue | other (gills) |
| tissue_preservation | Dried |
| tissue_preservation_temperature | 40.0 |
| work_order | 21027 |