Sarocladium, Reference Genome, Illumina-transcriptomics, Sarocladium tissue growing on stripe rust
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-05-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | NA |
| analysis_software | Illumina DRAGEN BCLConvert 4.3.16 |
| ancillary_notes | RNA isolated from the hyperparasite growing on stripe rust spores as a form of nutrition |
| associated_media | Images of colonies available |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1790/20250530_FUN_BRF_467821_22KMT3LT3/ |
| bioplatforms_dataset_id | 102.100.100/467821 |
| bioplatforms_library_id | 102.100.100/467155 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/465103 |
| ccg_jira_ticket | BPAOPS-1790 |
| cell_postion | N/A |
| class | Sordariomycetes |
| collection_date | 2022-03-10 |
| collection_method | Environment: collected rust infected leaves, kept at high humidity to promote growth then subcultured fluffy growth until a pure culture was obtained |
| collector | Jack Wess (ANU) |
| common_name | Sarocladium |
| country | Australia |
| data_context | Reference Genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-05-30 |
| date_of_transfer_to_archive | 2025-06-02 |
| decimal_latitude_public | NA |
| decimal_longitude_public | NA |
| depth | NA |
| dna_treatment | N/A |
| env_broad_scale | Artificial growth conditions habitat |
| env_local_scale | Growth cabinet |
| env_medium | Stripe rust infected wheat leaf |
| experimental_design | N/A |
| facility_project_code | NA |
| facility_sample_id | 467155_FUN_BRF_22KMT3LT3_ACAGCGACCA-CAGGAGCTCT |
| family | Sarocladiaceae |
| fast5_compression | N/A |
| flow_cell_id | 22KMT3LT3 |
| flowcell_id | 22KMT3LT3 |
| flowcell_type | NovaSeq X Series 10B |
| folder_name | 20250530_FUN_BRF_467821_22KMT3LT3 |
| genus | Sarocladium |
| habitat | Australian National University Campus |
| health_state | NA |
| host_common_name | Stripe rust |
| host_family | Pucciniaceae |
| host_organ | NA |
| host_scientific_name | Puccinia striiformis f.sp. Tritici |
| host_status | Cultivated |
| host_symptom | Pink fluffy growth |
| identified_by | Jack Wess (ANU) |
| indigenous_location | Ngunnawal and Ngambri land |
| insert_size_range | 381.0 |
| isolate | Sample discovered growing on stripe rust pustules in planta |
| library_comments | N/A |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 467155 |
| library_index_id | UDP0146V3 |
| library_index_id_dual | UDP0146V3 |
| library_index_seq_dual | CAGGAGCTCT |
| library_index_sequence | ACAGCGACCA |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 0.277 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATacagcgaccaCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACcaggagctctTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | N/A |
| library_prepared_by | Lachlan Morrison |
| library_selection | N/A |
| library_source | Total RNA |
| library_strategy | Tagmentation |
| library_type | Illumina-transcriptomics |
| life_stage | Other (mature hyperparasite and prey spore) |
| location_info_restricted | NA |
| location_text | The Australian National University, 46 Sullivans Creek Rd, Acton ACT 2601 |
| material_conc_ng_ul | 216.0 |
| material_extracted_by | Jack Wess |
| material_extraction_date | 2025-04-05 |
| material_extraction_method | Qiagen Rneasy Plant Mini Kit |
| material_extraction_type | total RNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 1.0 |
| order | Hypocreales |
| phylum | Ascomycota |
| project_collaborators | Jack Wess |
| project_lead | John Rathjen |
| sample_collection_type | wild |
| sample_custodian | Jack Wess, Australian National University |
| sample_id | SRSh_RNA_IS2 |
| sample_quality | Highly pure |
| sample_type | mixed culture |
| scientific_name | Sarocladium sp. |
| scientific_name_authorship | Jack Wess |
| scientific_name_note | All identifications are to genus level and identified via sequencing the ITS barcode region of the fungus |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| source_population | NA |
| species | NA |
| specimen_custodian | Jack Wess, Australian National University |
| specimen_id | SRSh_RNA_IS2 |
| specimen_id_description | Short-hand identifier used by researcher |
| state_or_region | Australian Capital Territory |
| sub_species | NA |
| taxon_id | NA |
| taxonomic_group | Fungi |
| temperature | 22.0 |
| ticket | BPAOPS-1790 |
| tissue | Sarocladium tissue growing on stripe rust |
| tissue_preservation | 25% glycerol stock of pure Sarocladium spores |
| tissue_preservation_temperature | -80.0 |
| type_status | NA |
| wild_captive | NA |
| work_order | 21009 |