Trichothecium, Reference Genome, Illumina-transcriptomics, Trichothecium tissue growing on stripe rust
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This dataset is currently under a short embargo period until May 30, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-05-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | NA |
| analysis_software | Illumina DRAGEN BCLConvert 4.3.16 |
| ancillary_notes | RNA isolated from the hyperparasite growing on stripe rust spores as a form of nutrition |
| associated_media | Images of colonies available |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1790/20250530_FUN_BRF_467821_22KMT3LT3/ |
| bioplatforms_dataset_id | 102.100.100/467821 |
| bioplatforms_library_id | 102.100.100/467150 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/465098 |
| ccg_jira_ticket | BPAOPS-1790 |
| cell_postion | N/A |
| class | Sordariomycetes |
| collection_date | 2022-03-17 |
| collection_method | Environment: collected rust infected leaves, kept at high humidity to promote growth then subcultured fluffy growth until a pure culture was obtained |
| collector | Jack Wess (ANU) |
| common_name | Trichothecium |
| country | Australia |
| data_context | Reference Genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-05-30 |
| date_of_transfer_to_archive | 2025-06-02 |
| decimal_latitude_public | NA |
| decimal_longitude_public | NA |
| depth | NA |
| dna_treatment | N/A |
| env_broad_scale | outdoor envrionment |
| env_local_scale | Poplar trees surrounding a sports field and near a riverbank on a university campus |
| env_medium | Poplar rust infected Poplar leaf |
| experimental_design | N/A |
| facility_project_code | NA |
| facility_sample_id | 467150_FUN_BRF_22KMT3LT3_CTTATTGGCC-GATAACAAGT |
| family | Hypocreales incertae sedis |
| fast5_compression | N/A |
| flow_cell_id | 22KMT3LT3 |
| flowcell_id | 22KMT3LT3 |
| flowcell_type | NovaSeq X Series 10B |
| folder_name | 20250530_FUN_BRF_467821_22KMT3LT3 |
| genus | Trichothecium |
| habitat | Australian National University Campus |
| health_state | NA |
| host_common_name | Poplar rust |
| host_family | Melampsoraceae |
| host_organ | NA |
| host_scientific_name | Melampsora medusae |
| host_status | Wild |
| host_symptom | Pink fluffy growth |
| identified_by | Jack Wess (ANU) |
| indigenous_location | Ngunnawal and Ngambri land |
| insert_size_range | 381.0 |
| isolate | Sample discovered growing on Poplar rust pustules in planta |
| library_comments | N/A |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 467150 |
| library_index_id | UDP0141 |
| library_index_id_dual | UDP0141 |
| library_index_seq_dual | GATAACAAGT |
| library_index_sequence | CTTATTGGCC |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 0.757 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcttattggccCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACgataacaagtTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 12.0 |
| library_pcr_reps | N/A |
| library_prepared_by | Lachlan Morrison |
| library_selection | N/A |
| library_source | Total RNA |
| library_strategy | Tagmentation |
| library_type | Illumina-transcriptomics |
| life_stage | Other (mature hyperparasite and prey spore) |
| location_info_restricted | NA |
| location_text | The Australian National University, 46 Sullivans Creek Rd, Acton ACT 2601 |
| material_conc_ng_ul | 115.2 |
| material_extracted_by | Jack Wess |
| material_extraction_date | 2025-03-06 |
| material_extraction_method | Qiagen Rneasy Plant Mini Kit |
| material_extraction_type | total RNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 1.0 |
| order | Hypocreales |
| phylum | Ascomycota |
| project_collaborators | Jack Wess |
| project_lead | John Rathjen |
| sample_collection_type | wild |
| sample_custodian | Jack Wess, Australian National University |
| sample_id | PCB_RNA_IS3 |
| sample_quality | Highly pure |
| sample_type | mixed culture |
| scientific_name | Trichothecium sp. |
| scientific_name_authorship | Jack Wess |
| scientific_name_note | All identifications are to genus level and identified via sequencing the ITS barcode region of the fungus |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| source_population | NA |
| species | NA |
| specimen_custodian | Jack Wess, Australian National University |
| specimen_id | PCB_RNA_IS3 |
| specimen_id_description | Short-hand identifier used by researcher |
| state_or_region | Australian Capital Territory |
| sub_species | NA |
| taxon_id | NA |
| taxonomic_group | Fungi |
| temperature | 22.0 |
| ticket | BPAOPS-1790 |
| tissue | Trichothecium tissue growing on stripe rust |
| tissue_preservation | 25% glycerol stock of pure Trichothecium spores |
| tissue_preservation_temperature | -80.0 |
| type_status | NA |
| wild_captive | NA |
| work_order | 21009 |