southern bracket, Resequenced genome, Illumina-shortread, basidiocarp
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This dataset is currently under a short embargo period until August 28, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-08-28 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | 226.0 |
| analysis_software | NovaSeq X Control Software v1.3.1.59007; Real Time Analysis v4.6.7; Dragen BCL Convert vt 07.031.732.4.3.6 |
| ancillary_notes | NA |
| associated_media | photos of brackets |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1882/20250828_FUN_AGRF_CAGRF25040332_2353F5LT3/ |
| bioplatforms_dataset_id | 102.100.100/467818 |
| bioplatforms_library_id | 102.100.100/467053 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/465001 |
| ccg_jira_ticket | BPAOPS-1882 |
| class | Agaricomycete |
| collection_date | 2020-08-23 |
| collection_method | basidiocarp |
| collection_permit | botanic garden authorisation |
| collector | A Mudge |
| collector_sample_id | AP42 |
| common_name | southern bracket |
| country | Australia |
| data_context | Resequenced genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-08-28 |
| date_of_transfer_to_archive | 2025-08-28 |
| decimal_latitude_public | -27.5 |
| decimal_longitude_public | 153.0 |
| depth | NA |
| env_broad_scale | terrestrial biome [ENVO_00000446] |
| env_local_scale | ENVO:00000856 |
| env_medium | ENVO_01001121 |
| facility_project_code | CAGRF25040332 |
| family | Ganodermataceae |
| flow_cell_id | 2353F5LT3 |
| flowcell_id | 2353F5LT3 |
| flowcell_type | 10B-300 |
| folder_name | 20250828_FUN_AGRF_ CAGRF25040332_2353F5LT3 |
| genus | Ganoderma |
| habitat | Urban |
| health_state | NA |
| host_common_name | palm |
| host_family | palm |
| host_organ | stump |
| host_scientific_name | unknown |
| host_status | dead |
| host_symptom | unknown |
| identified_by | A Mudge |
| insert_size_range | 550.0 |
| isolate | AP42 |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 467053 |
| library_index_seq_dual | UDP0054V3-F & UDP0054V3-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 2.42 |
| library_oligo_sequence_dual | CTATTACTAC-GAGTCTCTCC |
| library_pcr_cycles | 5.0 |
| library_prep_date | 2025-08-18 |
| library_prepared_by | RL |
| library_source | DNA |
| library_type | Illumina-shortread |
| life_stage | fruiting body |
| location_info_restricted | yes |
| location_text | Mt Coot-tha Botanic Gardens |
| material_extracted_by | A. Mudge |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| order | Polyporales |
| phylum | Basidiomycota |
| project_lead | Agnieszka Mudge |
| sample_collection_type | private collection |
| sample_custodian | A Mudge |
| sample_id | AP42 |
| sample_quality | viable |
| sample_type | living collection |
| scientific_name | Ganoderma australe |
| scientific_name_authorship | (Fr.) Pat. |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X_Plus |
| sequencing_platform | NovaSeq |
| source_population | NA |
| species | australe |
| specimen_custodian | A Mudge |
| specimen_id | AP42 |
| state_or_region | Queensland |
| taxon_id | NCBI:txid34458 |
| taxonomic_group | fungus |
| temperature | unknown |
| ticket | BPAOPS-1882 |
| tissue | basidiocarp |
| tissue_preservation | glycerol stock of culture |
| tissue_preservation_temperature | ambient |
| type_status | no |
| wild_captive | wild |
| work_order | 21024 |