NA, Reference genome, Illumina-shortread, leaf
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-05-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | NA |
| analysis_software | Illumina DRAGEN BCLConvert 4.3.16 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1789/20250530_FUN_BRF_467817_22KMT3LT3/ |
| bioplatforms_dataset_id | 102.100.100/467817 |
| bioplatforms_library_id | 102.100.100/467046 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/464992 |
| ccg_jira_ticket | BPAOPS-1789 |
| cell_postion | N/A |
| class | Pucciniomycetes |
| collection_date | 2017-10-17 |
| collection_method | wild collected diseased plant material |
| collection_permit | unknown |
| collector | K. Ireland |
| collector_sample_id | NA |
| common_name | NA |
| country | South Africa |
| data_context | Reference genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-05-30 |
| date_of_transfer_to_archive | 2025-06-02 |
| depth | NA |
| dna_treatment | N/A |
| env_broad_scale | temperate marginal sea biome |
| env_local_scale | coastal sea biome |
| env_medium | organic material |
| experimental_design | N/A |
| facility_project_code | NA |
| facility_sample_id | 467046_FUN_BRF_22KMT3LT3_GTAACTTGGT-CGCCATACCT |
| family | Pucciniaceae |
| fast5_compression | N/A |
| flow_cell_id | 22KMT3LT3 |
| flowcell_id | 22KMT3LT3 |
| flowcell_type | NovaSeq X Series 10B |
| folder_name | 20250530_FUN_BRF_467817_22KMT3LT3 |
| genus | Puccinia |
| habitat | coastal habitat |
| health_state | Diseased |
| host_common_name | African boxthorn |
| host_family | Solanaceae |
| host_organ | leaf |
| host_scientific_name | Lycium ferocissimum |
| host_status | Wild |
| host_symptom | leaf pustule |
| identified_by | K. Ireland |
| indigenous_location | NA |
| insert_size_range | 713.0 |
| isolate | Western Cape isolate |
| library_comments | N/A |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 467046 |
| library_index_id | UDP0186 |
| library_index_id_dual | UDP0186 |
| library_index_seq_dual | CGCCATACCT |
| library_index_sequence | GTAACTTGGT |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 5.08 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgtaacttggtCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACcgccatacctTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 5.0 |
| library_pcr_reps | N/A |
| library_prepared_by | Lachla Morrison |
| library_selection | N/A |
| library_source | gDNA |
| library_strategy | Tagmentation |
| library_type | Illumina-shortread |
| life_stage | mature plant |
| location_info_restricted | yes |
| location_text | Miller's Point |
| material_conc_ng_ul | 6.4 |
| material_extracted_by | V. Mohankumar |
| material_extraction_date | 2024-10-01 |
| material_extraction_method | Qiagen Dneasy Plant Mini Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 1.0 |
| order | Pucciniales |
| phylum | Basidiomycota |
| project_collaborators | Cecile Gueidan, Gavin Hunter |
| project_lead | Beatrice Apirajkamol |
| sample_collection_type | living collection, herbarium |
| sample_custodian | CSIRO, NSW Plant Pathology and Mycology Herbarium |
| sample_id | DAR 85879 |
| sample_id_description | NSW Plant Pathology and Mycology Herbarium |
| sample_quality | good |
| sample_type | pure urediniospore culture |
| scientific_name | Puccinia rapipes |
| scientific_name_authorship | Berndt & E. Uhlmann (2006) |
| scientific_name_note | NA |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| source_population | Miller's Point |
| species | rapipes |
| specimen_custodian | CSIRO, NSW Plant Pathology and Mycology Herbarium |
| specimen_id | DAR 85879 |
| specimen_id_description | NSW Plat Pathology and Mycology Herbarium |
| state_or_region | Western Cape |
| sub_species | NA |
| taxon_id | 2575760.0 |
| taxonomic_group | Fungi |
| temperature | NA |
| ticket | BPAOPS-1789 |
| tissue | leaf |
| tissue_preservation | NA |
| tissue_preservation_temperature | NA |
| type_status | no |
| wild_captive | wild |
| work_order | 21009 |