NA, Reference genome, Illumina-shortread, leaf
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This dataset is currently under a short embargo period until May 30, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-05-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | NA |
| analysis_software | Illumina DRAGEN BCLConvert 4.3.16 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1789/20250530_FUN_BRF_467817_22KMT3LT3/ |
| bioplatforms_dataset_id | 102.100.100/467817 |
| bioplatforms_library_id | 102.100.100/467046 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/464992 |
| ccg_jira_ticket | BPAOPS-1789 |
| cell_postion | N/A |
| class | Pucciniomycetes |
| collection_date | 2017-10-17 |
| collection_method | wild collected diseased plant material |
| collection_permit | unknown |
| collector | K. Ireland |
| collector_sample_id | NA |
| common_name | NA |
| country | South Africa |
| data_context | Reference genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-05-30 |
| date_of_transfer_to_archive | 2025-06-02 |
| depth | NA |
| dna_treatment | N/A |
| env_broad_scale | temperate marginal sea biome |
| env_local_scale | coastal sea biome |
| env_medium | organic material |
| experimental_design | N/A |
| facility_project_code | NA |
| facility_sample_id | 467046_FUN_BRF_22KMT3LT3_GTAACTTGGT-CGCCATACCT |
| family | Pucciniaceae |
| fast5_compression | N/A |
| flow_cell_id | 22KMT3LT3 |
| flowcell_id | 22KMT3LT3 |
| flowcell_type | NovaSeq X Series 10B |
| folder_name | 20250530_FUN_BRF_467817_22KMT3LT3 |
| genus | Puccinia |
| habitat | coastal habitat |
| health_state | Diseased |
| host_common_name | African boxthorn |
| host_family | Solanaceae |
| host_organ | leaf |
| host_scientific_name | Lycium ferocissimum |
| host_status | Wild |
| host_symptom | leaf pustule |
| identified_by | K. Ireland |
| indigenous_location | NA |
| insert_size_range | 713.0 |
| isolate | Western Cape isolate |
| library_comments | N/A |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 467046 |
| library_index_id | UDP0186 |
| library_index_id_dual | UDP0186 |
| library_index_seq_dual | CGCCATACCT |
| library_index_sequence | GTAACTTGGT |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 5.08 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgtaacttggtCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACcgccatacctTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 5.0 |
| library_pcr_reps | N/A |
| library_prepared_by | Lachla Morrison |
| library_selection | N/A |
| library_source | gDNA |
| library_strategy | Tagmentation |
| library_type | Illumina-shortread |
| life_stage | mature plant |
| location_info_restricted | yes |
| location_text | Miller's Point |
| material_conc_ng_ul | 6.4 |
| material_extracted_by | V. Mohankumar |
| material_extraction_date | 2024-10-01 |
| material_extraction_method | Qiagen Dneasy Plant Mini Kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 1.0 |
| order | Pucciniales |
| phylum | Basidiomycota |
| project_collaborators | Cecile Gueidan, Gavin Hunter |
| project_lead | Beatrice Apirajkamol |
| sample_collection_type | living collection, herbarium |
| sample_custodian | CSIRO, NSW Plant Pathology and Mycology Herbarium |
| sample_id | DAR 85879 |
| sample_id_description | NSW Plant Pathology and Mycology Herbarium |
| sample_quality | good |
| sample_type | pure urediniospore culture |
| scientific_name | Puccinia rapipes |
| scientific_name_authorship | Berndt & E. Uhlmann (2006) |
| scientific_name_note | NA |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| source_population | Miller's Point |
| species | rapipes |
| specimen_custodian | CSIRO, NSW Plant Pathology and Mycology Herbarium |
| specimen_id | DAR 85879 |
| specimen_id_description | NSW Plat Pathology and Mycology Herbarium |
| state_or_region | Western Cape |
| sub_species | NA |
| taxon_id | 2575760.0 |
| taxonomic_group | Fungi |
| temperature | NA |
| ticket | BPAOPS-1789 |
| tissue | leaf |
| tissue_preservation | NA |
| tissue_preservation_temperature | NA |
| type_status | no |
| wild_captive | wild |
| work_order | 21009 |