NA, reference genome, illumina-shortread, NA
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2026-02-06 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| ancillary_notes | NA |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1740/20250206_FUN_AGRF_CAGRF24110256_22W22NLT3/ |
| bioplatforms_dataset_id | 102.100.100/467812 |
| bioplatforms_library_id | 102.100.100/466894 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/464891 |
| ccg_jira_ticket | BPAOPS-1740 |
| class | Ascomycota |
| collection_date | 2017-05-02 |
| collection_method | Environmental isolation |
| collection_permit | NA |
| collector | Calvert, J. |
| collector_sample_id | P1 1.2 |
| common_name | NA |
| country | Australia |
| data_context | reference genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-02-06 |
| date_of_transfer_to_archive | 2025-02-10 |
| depth | NA |
| facility_project_code | QAGRF24110256 |
| facility_sample_id | 18234-1 |
| family | Dermateaceae |
| flow_cell_id | 22W22NLT3 |
| flowcell_id | 22W22NLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20250206_FUN_AGRF_CAGRF24110256_22W22NLT3 |
| genus | Pezicula |
| health_state | NA |
| host_common_name | NA |
| host_family | NA |
| host_organ | NA |
| host_scientific_name | NA |
| host_status | NA |
| host_symptom | NA |
| insert_size_range | 520.0 |
| isolate | NA |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 466894 |
| library_index_seq_dual | UDP0289V2-F & UDP0289V2-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 0.223 |
| library_oligo_sequence_dual | AGATAGTAGC-GGCACGCCAT |
| library_pcr_cycles | 8.0 |
| library_prep_date | 2024-12-20 |
| library_prepared_by | JL |
| library_source | DNA |
| library_type | illumina-shortread |
| life_stage | NA |
| location_text | Stanthorpe |
| material_extracted_by | AGRF |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| order | Helotiales |
| phylum | Ascomycota |
| project_collaborators | Stefan Valter, Scott Minns |
| project_lead | Ernest Lacey |
| sample_collection_type | Private |
| sample_custodian | Microbial Screening Technologies |
| sample_id | FP3801 |
| sample_id_description | internal numbering |
| sample_quality | NA |
| sample_type | Culture_collection |
| scientific_name | Pezicula radicicola |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| source_population | NA |
| species | radicicola |
| specimen_custodian | Microbial Screening Technologies |
| specimen_id | FP3801 |
| specimen_id_description | internal numbering |
| state_or_region | Queensland |
| taxon_id | 1663500.0 |
| taxonomic_group | fungi |
| temperature | unknown |
| ticket | BPAOPS-1740 |
| tissue | NA |
| tissue_preservation | Frozen Glycerol |
| tissue_preservation_temperature | -80.0 |
| type_status | NA |
| wild_captive | NA |
| work_order | 21020 |