Rhodocollybia sp, Reference Genome, illumina-shortread, Sporebody

Omphalotaceae, Rhodocollybia sp. ACV 13, Fungi, Project Lead: Ema Corro

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members
Access Control Date 2026-07-17
Access Control Mode date
Sequence Data Type illumina-shortread
analysis_software NovaSeq X Control Software v1.3.1.59007; Real Time Analysis v4.6.7; Dragen BCL Convert vt 07.031.732.4.3.6
ancillary_notes https://www.inaturalist.org/observations/126442643
associated_media https://www.inaturalist.org/observations/126442643
base_url https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1845/20250717_FUN_CAGRF24080246_233LJJLT3/
bioplatforms_dataset_id 102.100.100/467807
bioplatforms_library_id 102.100.100/466593
bioplatforms_project Australian Functional Fungi Initiative
bioplatforms_sample_id 102.100.100/464590
ccg_jira_ticket BPAOPS-1845
class Agaricomycetes
collection_date 2022-07-15
collection_method Herbarium voucher
collection_permit DEECA permit no 10010390
collector Alison Vandekolk
common_name Rhodocollybia sp
country Australia
data_context Reference Genome
data_type Illumina-shortread
date_of_transfer 2025-07-17
date_of_transfer_to_archive 2025-07-23
decimal_latitude_public -37.21507
decimal_longitude_public 145.87638
env_broad_scale Eucalypt / tea tree forest
env_medium Mossy soil
facility_project_code CAGRF24080246
facility_sample_id 19600-36
family Omphalotaceae
flow_cell_id 233LJJLT3
flowcell_id 233LJJLT3
flowcell_type 10B-300
folder_name 20250717_FUN_CAGRF24080246_233LJJLT3
genus Rhodocollybia sp.
health_state unknown
identified_by Alison Vandekolk
indigenous_location Taungurung
insert_size_range 542.0
library_construction_protocol IDT xGen Prism
library_id 466593
library_index_seq_dual D_i7 & D_i5
library_location AGRF Melbourne
library_ng_ul 10.7
library_oligo_sequence_dual ACATCGGCCT-GCGTAATGTT
library_prep_date 2025-06-23
library_prepared_by BP
library_source DNA
library_type illumina-shortread
life_stage Mature organism
location_info_restricted No
location_text Taylor Bay
material_extracted_by AGRF
metadata_revision_date 2025-08-25
metadata_revision_filename FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx
order Agaricales
phylum Basidiomycota
project_lead Ema Corro
sample_collection_type Herbarium
sample_custodian Ema Corro Mycommunity Applied Mycology
sample_id ACV 13
sample_id_description Mycommunity Applied Mycology
sample_quality Good
sample_type Tissue sample
scientific_name Rhodocollybia sp
scientific_name_authorship Singer (1939)
scientific_name_note unknown species
sequencing_facility AGRF
sequencing_kit_chemistry_version XLEAP SBS
sequencing_model X Plus
sequencing_platform NovaSeq
specimen_custodian State Herbarium of Victoria
specimen_id ACV 13
specimen_id_description Mycommunity Applied Mycology individual herbarium no before sent to MEL
state_or_region Victoria
taxon_id 71917.0
taxonomic_group Fungi
ticket BPAOPS-1845
tissue Sporebody
tissue_preservation Silica beads
tissue_preservation_temperature 20.0
wild_captive Wild
work_order 21018