Black Fungus, black bread mould, reference genome, illumina-transcriptomics, Hypodermis
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2025-09-27 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| altitude | NA |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| ancillary_notes | NA |
| associated_media | None |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1694/20240927_FUN_AGRF_CAGRF24080319_22T5WLLT3/ |
| bioplatforms_dataset_id | 102.100.100/467803 |
| bioplatforms_library_id | 102.100.100/466453 |
| bioplatforms_project | Australian Functional Fungi Initiative |
| bioplatforms_sample_id | 102.100.100/464450 |
| ccg_jira_ticket | BPAOPS-1694 |
| class | Mucoromycetes |
| collection_date | 2021-06-01 |
| collection_method | Culturing on Potato Dextrose Broth |
| collection_permit | Institutional Biosafety Committee (IBC) |
| collector | Caterina Selva |
| collector_sample_id | CLIN_001 |
| common_name | Black Fungus, black bread mould |
| country | Australia |
| data_context | reference genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2024-09-27 |
| date_of_transfer_to_archive | 2024-10-01 |
| decimal_latitude_public | NA |
| decimal_longitude_public | NA |
| depth | NA |
| env_broad_scale | NA |
| env_local_scale | NA |
| env_medium | NA |
| facility_project_code | CAGRF24080319 |
| facility_sample_id | 17402-2 |
| family | Mucoraceae |
| flow_cell_id | 22T5WLLT3 |
| flowcell_id | 22T5WLLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240927_FUN_AGRF_CAGRF24080319_22T5WLLT3 |
| genus | Rhizopus |
| habitat | Infected human |
| health_state | Healthy |
| host_common_name | Human |
| host_family | Hominidae |
| host_organ | Skin |
| host_scientific_name | Homo sapiens |
| host_status | Infected human |
| host_symptom | Necrotised tissue |
| identified_by | Caterina Selva, Flinders University |
| indigenous_location | Kaurna |
| insert_size_range | 384.0 |
| isolate | Clinical isolate |
| library_construction_protocol | Illumina Stranded mRNA (RNA-Seq) |
| library_id | 466453 |
| library_index_seq_dual | UDP0089-F & UDP0089-R |
| library_location | AGRF Melbourne |
| library_ng_ul | 73.5 |
| library_oligo_sequence_dual | GTCCGTAAGC-CGTGTATCTT |
| library_pcr_cycles | 13.0 |
| library_prep_date | 2024-08-30 |
| library_prepared_by | JM |
| library_source | RNA |
| library_strategy | mRNA seq |
| library_type | illumina-transcriptomics |
| life_stage | NA |
| location_info_restricted | no |
| location_text | Obtained from SA Pathology |
| material_conc_ng_ul | 50.0 |
| material_extracted_by | Caterina Selva |
| material_extraction_date | 2024-07-23 |
| material_extraction_method | Trizol chloroform |
| material_extraction_type | RNA |
| metadata_revision_date | 2025-08-25 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx |
| order | Mucorales |
| phylum | Mucoromycota |
| project_lead | Caterina Selva |
| sample_collection_type | living organism |
| sample_custodian | Caterina Selva |
| sample_id | CLIN_001_Mycelia_RNA |
| sample_id_description | Personal, created by Caterina Selva |
| sample_quality | Absorbance ratios A260/280 and A260/230 within AGRF reccommendations |
| sample_type | tissue sample |
| scientific_name | Rhizopus arrhizus |
| scientific_name_authorship | Fischer, 1892 |
| scientific_name_note | Many taxonomic synonyms. For example, R. oryzae and R. delemar |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| source_population | NA |
| species | arrhizus |
| specimen_custodian | Caterina Selva, Flinders University |
| specimen_id | CLIN_001 |
| specimen_id_description | Personal, created by Caterina Selva |
| state_or_region | South Australia |
| sub_species | NA |
| taxon_id | 64495.0 |
| taxonomic_group | Fungi |
| temperature | NA |
| ticket | BPAOPS-1694 |
| tissue | Hypodermis |
| tissue_preservation | Nucleic acid in MQ water, stored at -20C |
| tissue_preservation_temperature | -20.0 |
| type_status | NA |
| wild_captive | None, isolated from infected human |
| work_order | 21012 |