Death cap, reference genome, Illumina-transcriptomics, mushroom

Amanitaceae, Amanita phalloides, CT4953, Fungi, Project Lead: Camille Truong

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members
Access Control Date 2026-04-10
Access Control Mode date
Sequence Data Type illumina-shortread
altitude 20 m
analysis_software NovaSeq X Control Software v1.2.2.48004;  Real Time Analysis  v4.6.7;  Dragen BCL Convert  v07.021.645.4.0.3
associated_media CT4953_01.tif, CT4953_02.tif, CT4953_03.tif
base_url https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1643/20240814_FUN_AGRF_CAGRF24060050_22N37NLT3/
bioplatforms_dataset_id 102.100.100/467795
bioplatforms_library_id 102.100.100/465900
bioplatforms_project Australian Functional Fungi Initiative
bioplatforms_sample_id 102.100.100/463901
ccg_jira_ticket BPAOPS-1643
class Agaricomycetes
collection_date 2024-04-12
collection_method herbarium voucher
collection_permit Not required
collector C. Truong
collector_sample_id CT4953
common_name Death cap
country Australia
data_context reference genome
data_type Illumina-shortread
date_of_transfer 2024-08-14
date_of_transfer_to_archive 2024-08-14
decimal_latitude_public -37.82796333
decimal_longitude_public 144.9788228
description Amanita phalloides
env_broad_scale terrestrial biome [ENVO_00000446]
env_local_scale anthropised terrestrial environmetal zone [ENVO_01001200]
env_medium soil
facility_project_code CAGRF24060050
facility_sample_id 16835-01
family Amanitaceae
flow_cell_id 22N37NLT3
flowcell_id 22N37NLT3
flowcell_type 10B-300
folder_name 20240814_FUN_AGRF_CAGRF24060050_22N37NLT3
genus Amanita
habitat Isolated oak in park
health_state Healthy
identified_by C. Truong
insert_size_range 265 bp ± 50 bp
library_comments Passed QC
library_construction_protocol Illumina Stranded RNA with Ribo-Zero Plus
library_id 465900
library_index_id_dual UDP0384-F & UDP0384-R
library_index_seq_dual AGTGGTTAAG-GGTGGAATAC
library_location AGRF Melbourne
library_ng_ul 38.2
library_pcr_cycles 13.0
library_prep_date 2024-07-13
library_prepared_by JM
library_selection RANDOM
library_source RNA
library_type Illumina-transcriptomics
life_stage Adult
location_text Royal Botanic Gardens Melbourne, Hopetoun lawn
metadata_revision_date 2025-08-25
metadata_revision_filename FUN_MASTER_sample_metadata_FORDP_20250825_NOLATLON.xlsx
order Agaricales
phylum Basidiomycota
project_lead Camille Truong
sample_collection_type herbarium
sample_custodian C. Truong
sample_id CT4953
sample_id_description National Herbarium of Victoria (MEL)
sample_quality excellent
sample_type fresh tissue sample
scientific_name Amanita phalloides
scientific_name_authorship (Vaill. ex Fr.) Link
sequencing_facility AGRF
sequencing_kit_chemistry_version X-LEAP SBS
sequencing_model X-Plus
sequencing_platform NovaSeq
species phalloides
specimen_custodian National Herbarium of Victoria (MEL)
specimen_id MEL 2547568A
specimen_id_description National Herbarium of Victoria (MEL)
state_or_region Victoria
taxon_id 67723.0
taxonomic_group Fungi
ticket BPAOPS-1643
tissue mushroom
tissue_preservation RNALater
tissue_preservation_temperature -20.0
wild_captive wild
work_order 21005