BASE Amplicons ITS 62085_1 C5M89
Dataset size is: 17.42 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2019-01-21 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| amplicon | ITS |
| analysis_software_version | 2.6.2.3 |
| archive_ingestion_date | 2018-10-23 |
| base_amplicon_linkage | C5M89 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/its/ramaciotti/BPAOPS-726/ |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| biotic_relationship | Free-living |
| collection_date | 2017-05-27T00:00:00 |
| comments | 62085_1_ITS_UNSW_GCATGGCT_TAGTGTAG_C5M89 |
| conductivity (dS/m) | 92.9 |
| conductivity_meth | meth_1.20 |
| data_generated | 2018-10-23 |
| data_type | MiSeq ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads.bioplatforms.com/bpa/base/raw/amplicons/its/ramaciotti/BPAOPS-726/ |
| date_of_transfer | 2018-10-23 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | BASE |
| dilution | neat |
| env_broad_scale | 6 Water |
| env_local_scale | 6.5.2 Marsh/wetland—production |
| env_medium | Soil [ENVO_00001998] |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| flow_id | C5M89 |
| folder_name | 20181019_UNSW_BPA_BASE_C5M89 |
| funding_agency | Geocsience Australia (GA)|Australian Microbiome |
| geo_loc_name | Australia:Northern Territory [GAZ_00002787] |
| lat_lon (decimal_degrees) | -17.2732 133.4619 |
| latitude (decimal_degrees) | -17.2732 |
| local_class | Vertosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 133.4619 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| nucl_acid_ext | meth_3.1.1 |
| pcr | P |
| ph | 8.66 |
| ph_meth | meth_1.20 |
| read_length | 300bp |
| reads | 92475 |
| samp_mat_process | meth_1.20 |
| sample_attribution | Geoscience Australia (GA)|Australian Microbiome |
| sample_database_file | AM_db_v4.2_202601141151.db |
| sample_extraction_id | 62085_1 |
| sample_id | 102.100.100/62085 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; GA_NAGS_metadata_20220705_AM_formatted_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; NAGS_methods_1_2_to_meth_1_20_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_site_location_description | Pamayu |
| sample_submission_date | 2018-10-23 |
| sample_type | Soil |
| source_mat_id | 102.100.100/62085 |
| store_cond | air-dried |
| target | ITS |
| ticket | BPAOPS-726 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/62085 |
| utc_date_sampled | 2017-05-27 |