Scarlet Honeyeater, Scarlet Myzomela, Reference genome, PacBio-HiFi, Blood
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until July 17, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-07-17 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| altitude | 50.0 |
| analysis_software | SMRT Link Analysis 13.3.0.253824 |
| associated_media | Photos available |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1833/20250716_AVIAN_AGRF_CAGRF25060007_m84073_250712_145943_s4/ |
| bioplatforms_dataset_id | 102.100.100/613533 |
| bioplatforms_library_id | 102.100.100/611850 |
| bioplatforms_project | Australian Avian Genomics Initiative |
| bioplatforms_sample_id | 102.100.100/609843 |
| cell_postion | D01 |
| class | Aves |
| collection_date | 2025-05-26 |
| collection_method | Mist Net |
| collection_permit | ENV/03/25/AEC |
| collector | Will Goulding |
| collector_sample_id | 323.0 |
| common_name | Scarlet Honeyeater, Scarlet Myzomela |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-17 |
| date_of_transfer_to_archive | 2025-07-18 |
| decimal_latitude_public | -27.27 |
| decimal_longitude_public | 152.85 |
| dna_treatment | SHEARING |
| env_broad_scale | ENVO_01000175 |
| env_local_scale | subtropical woodland biome [ENVO_01000222] |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | CAGRF25060007 |
| facility_sample_id | 611850.0 |
| family | Melphagidae |
| fast5_compression | NA |
| flowcell_id | m84073_250712_145943_s4 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250716_AVIAN_AGRF_CAGRF25060007_m84073_250712_145943_s4 |
| genotypic_sex | Female |
| genus | Myzomela |
| habitat | RE 12.12.12 |
| health_state | Healthy |
| identified_by | William Goulding, Griffith University |
| indigenous_location | Garumngar clan of the Jinibara people |
| insert_size_range | 17000.0 |
| latitude | -27.27 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 3.0 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 325pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2025-06-19 |
| library_prepared_by | Lucas Trevisan |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | Unknown |
| location_info_restricted | No |
| location_text | Gold Scrub Lane, North Pine Dam Nature Refuge, Lake Samsonvale |
| longitude | 152.85 |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | Plumage and PCR Sex Primers |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Passeriformes |
| phenotypic_sex | Female |
| phylum | Chordata |
| project_collaborators | William Goulding |
| project_lead | Sonya Clegg |
| sample_collection_type | private |
| sample_custodian | Sonya May Clegg |
| sample_id | 01C-76314, 323 |
| sample_id_description | ABBBS band, project sample number |
| sample_quality | Shoud be good. Collected on the 26 May, so five days old. Defrosted once for Sex determination PCR |
| sample_type | Tissue sample |
| scientific_name | Myzomela sanguinolenta |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| sex_certainty | Certain |
| source_population | Lake Samsonvale, SEQ |
| species | sanguinolenta |
| specimen_custodian | Sonya May Clegg |
| specimen_id | 01C-76314, Blood sample 323 |
| specimen_id_description | ABBBS band, project sample number |
| state_or_region | Queensland |
| taxon_id | 266325 |
| taxonomic_group | Bird |
| temperature | 28.0 |
| ticket | BPAOPS-1833 |
| tissue | Blood |
| tissue_preservation | 100% ETOH AND Frozen |
| tissue_preservation_temperature | -20.0 |
| wild_captive | wild |
| work_order | 26010 |