Double-barred finch, Reference genome, PacBio-HiFi, blood
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This dataset is currently under a short embargo period until May 29, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-05-29 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| altitude | 183.0 |
| analysis_software | SMRT Link Analysis 13.3.0.253824 |
| ancillary_notes | Collection supported by ARC DP230101261. |
| associated_media | photos |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1787/20250528_AVIAN_AGRF_CAGRF25040478_m84073_250517_140854_s3/ |
| bioplatforms_dataset_id | 102.100.100/613514 |
| bioplatforms_library_id | 102.100.100/611846 |
| bioplatforms_project | Australian Avian Genomics Initiative (AVIAN) |
| bioplatforms_sample_id | 102.100.100/609521 |
| cell_postion | C01 |
| class | Aves |
| collection_date | 2024-01-21 |
| collection_method | mist net |
| collection_permit | MQ AEC 2024/007; SL100378 |
| collector | Simon Griffith, Rhiannon Schembri |
| collector_sample_id | 44713.0 |
| common_name | Double-barred finch |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-05-29 |
| date_of_transfer_to_archive | 2025-05-29 |
| death_date | 2025-01-28 |
| decimal_latitude_public | -32.2165951195 |
| decimal_longitude_public | 150.6149121446 |
| dna_treatment | SHEARING |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | CAGRF25040478 |
| facility_sample_id | 611846.0 |
| family | Estrildidae |
| fast5_compression | NA |
| flowcell_id | m84073_250517_140854_s3 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250528_AVIAN_AGRF_CAGRF25040478_m84073_250517_140854_s3 |
| genotypic_sex | unknown |
| genus | Stizoptera |
| habitat | Thorny brush in grassy paddock, near creek |
| health_state | healthy |
| identified_by | Simon Griffith |
| indigenous_location | Wonnarua |
| insert_size_range | 17000.0 |
| latitude | -32.2165951195 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 3.0 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 325pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2025-05-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult organism |
| location_text | Rawns farm behind house near creek, eastern edge of Manobalai Nature Reserve |
| longitude | 150.6149121446 |
| material_conc_ng_ul | 330.0 |
| material_extracted_by | Rhiannon Schembri |
| material_extraction_date | 2025-01-28 |
| material_extraction_method | PacBio Nanobind CBB HMW extraction kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | visual, dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Passeriformes |
| phenotypic_sex | female |
| phylum | Chordata |
| project_collaborators | Rhiannon Schembri |
| project_lead | Simon Griffith |
| sample_collection_type | private |
| sample_custodian | Simon Griffith |
| sample_id | DBF_44713.01 |
| sample_id_description | Species code + ABBBS band number + tissue sample code |
| sample_quality | Blood fixed in EDTA and immediately flash frozen in liquid nitrogen, then stored at -80 |
| sample_type | tissue sample |
| scientific_name | Stizoptera bichenovii bichenovii |
| scientific_name_authorship | Vigors & Horsfield, 1827 |
| scientific_name_note | New genus Stizoptera designated in Olsson & Alstrom (2020) based on phylogenetic evidence (formerly genus Taeniopygia). Specific epithet is sometimes written bichenoii. Nominate subspecies is the eastern form (white rump). |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| sex_certainty | certain |
| source_population | Muswellbrook |
| species | bichenovii |
| specimen_custodian | Simon Griffith |
| specimen_id | DBF_44713 |
| specimen_id_description | Species code + ABBBS band number |
| state_or_region | New South Wales |
| sub_species | bichenovii |
| taxon_id | 2058335 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1787 |
| tissue | blood |
| tissue_preservation | EDTA; liquid nitrogen |
| tissue_preservation_temperature | -80.0 |
| type_status | NA |
| wild_captive | wild |
| work_order | 26006 |