sandstone shrikethrush, Reference genome, PacBio-HiFi, heart
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This dataset is currently under a short embargo period until July 10, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-07-10 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1819/20250625_AVIAN_BRF_m84118_250625_042106_s2/ |
| bioplatforms_dataset_id | 102.100.100/613521 |
| bioplatforms_library_id | 102.100.100/611818 |
| bioplatforms_project | Australian Avian Genomics Initiative |
| bioplatforms_sample_id | 102.100.100/609818 |
| cell_postion | 1_B01 |
| class | Aves |
| collection_date | 2022-09-07 |
| collector | ANWC |
| common_name | sandstone shrikethrush |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-10 |
| date_of_transfer_to_archive | 2025-07-11 |
| decimal_latitude_public | -12.4911 |
| decimal_longitude_public | 133.0199 |
| dna_treatment | Short read eliminator and shearing with Microlab Prep |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | PacBio_WGS44_939 |
| facility_sample_id | 939-13 |
| family | Pachycephalidae |
| fast5_compression | bam |
| flowcell_id | m84118_250625_042106_s2 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250625_AVIAN_BRF_m84118_250625_042106_s2 |
| genus | Colluricincla |
| health_state | unknown |
| insert_size_range | 12612 |
| latitude | -12.4911 |
| library_comments | multiplexed with another samples from the Avian initiative |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_index_id_dual | bc2061 |
| library_index_seq_dual | CGAGCACGCTGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 8.76 |
| library_prep_date | 2025-06-12 |
| library_prepared_by | Xiangning Liu |
| library_selection | Short read eliminator |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | unknown |
| location_text | Mikginj Valley, West Arnhem Land; Northern Territory, Australia; -12.4911000000, 133.0199000000; LocID: 21842 |
| longitude | 133.0199 |
| material_extracted_by | CSIRO AGI |
| material_extraction_date | 2025-05-01 |
| material_extraction_type | HMW DNA |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 2.0 |
| order | Passeriformes |
| phylum | Chordata |
| project_collaborators | Australian National Wildlife Collection (ANWC) |
| project_lead | Anna Kearns |
| sample_collection_type | museum |
| sample_custodian | ANWC |
| sample_id | G52926 |
| sample_id_description | ANWC Genetic Sample Number |
| sample_quality | unknown |
| sample_type | tissue sample |
| scientific_name | Colluricincla woodwardi |
| scientific_name_authorship | Hartert, 1905 |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| species | woodwardi |
| specimen_custodian | Australian National Wildlife Collection (ANWC) |
| specimen_id | B62058 |
| specimen_id_description | ANWC Specimen Registration Number |
| state_or_region | Northern Territory |
| taxon_id | 461217 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1819 |
| tissue | heart |
| tissue_preservation | RNAlater |
| tissue_preservation_temperature | 4.0 |
| wild_captive | wild |
| work_order | 26004 |