Red-browed finch, Reference genome, PacBio-HiFi, blood
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This dataset is currently under a short embargo period until April 10, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extent |
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:aus-avian-consortium-members |
| Access Control Date | 2026-04-10 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| altitude | 165.0 |
| analysis_software | SMRT Link Analysis 13.3.0.253824 |
| ancillary_notes | Collection supported by ARC DP230101261. |
| associated_media | photos |
| bait_set_name | NA |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1774/20250409_AVIAN_AGRF_CAGRF24110452_m84073_250321_080406_s1/ |
| bioplatforms_dataset_id | 102.100.100/613514 |
| bioplatforms_library_id | 102.100.100/611520 |
| bioplatforms_project | Australian Avian Genomics Initiative (AVIAN) |
| bioplatforms_sample_id | 102.100.100/609520 |
| cell_postion | A01 |
| class | Aves |
| collection_date | 2024-01-22 |
| collection_method | mist net |
| collection_permit | MQ AEC 2024/007; SL100378 |
| collector | Simon Griffith, Rhiannon Schembri |
| collector_sample_id | 44714.0 |
| common_name | Red-browed finch |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-04-10 |
| date_of_transfer_to_archive | 2025-04-11 |
| death_date | 2025-01-28 |
| decimal_latitude_public | -32.2203568073 |
| decimal_longitude_public | 150.6363024593 |
| dna_treatment | SHEARING |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | CAGRF24110452 |
| facility_sample_id | 611520.0 |
| family | Estrildidae |
| fast5_compression | NA |
| flowcell_id | m84073_250321_080406_s1 |
| flowcell_type | SMRT Cell 25M |
| folder_name | 20250409_AVIAN_AGRF_CAGRF24110452_m84073_250321_080406_s1 |
| genotypic_sex | female |
| genus | Neochmia |
| habitat | Wind break next to horse paddock |
| health_state | healthy |
| identified_by | Simon Griffith |
| indigenous_location | Wonnarua |
| insert_size_range | 17000.0 |
| latitude | -32.2203568073 |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 3.0 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 285pM |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2025-02-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult organism |
| location_text | Coronet farm horse paddock, eastern edge of Manobalai Nature Reserve |
| longitude | 150.6363024593 |
| material_conc_ng_ul | 315.0 |
| material_extracted_by | Rhiannon Schembri |
| material_extraction_date | 2025-01-28 |
| material_extraction_method | PacBio Nanobind CBB HMW extraction kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-22 |
| metadata_revision_filename | 20250722_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | visual, dissection |
| model_base_caller | NA |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Passeriformes |
| phenotypic_sex | female |
| phylum | Chordata |
| project_collaborators | Rhiannon Schembri |
| project_lead | Simon Griffith |
| sample_collection_type | private |
| sample_custodian | Simon Griffith |
| sample_id | RBF_44714.01 |
| sample_id_description | Species code + ABBBS band number + tissue sample code |
| sample_quality | Blood fixed in EDTA and immediately flash frozen in liquid nitrogen, then stored at -80 |
| sample_type | tissue sample |
| scientific_name | Neochmia temporalis temporalis |
| scientific_name_authorship | Latham, 1801 |
| scientific_name_note | NCBI database lists common name as "Red-browed firetail" but this is less commonly used and is misleading as it is not in the firetail genus Stagonopleura. Nominate subspecies is the southern form. |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio SPRQ sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| sex_certainty | certain |
| source_population | Muswellbrook |
| species | temporalis |
| specimen_custodian | Simon Griffith |
| specimen_id | RBF_44714 |
| specimen_id_description | Species code + ABBBS band number |
| state_or_region | New South Wales |
| sub_species | temporalis |
| taxon_id | 2058297 |
| taxonomic_group | Bird |
| ticket | BPAOPS-1774 |
| tissue | blood |
| tissue_preservation | EDTA; liquid nitrogen |
| tissue_preservation_temperature | -80.0 |
| type_status | NA |
| wild_captive | wild |
| work_order | 26002 |