Common Eastern Froglet, Reference genome, Illumina-transcriptomics, ovaries
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members |
| Access Control Date | 2024-01-26 |
| Access Control Mode | date |
| Sequence Data Type | Illumina-transcriptomics |
| access_rights | No restrictions |
| ala_specimen_url | NA |
| analysis_software | NovaSeq X Control Software; Real Time Analysis; Dragen BCL Convert |
| analysis_software_version | v1.2.0.28691; v4.6.7; v07.021.645.4.0.3 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-1550/20240116_AusARG_AGRF_CAGRF23091299_22H37WLT3/ |
| bioplatforms_dataset_id | 102.100.100/351900 |
| bioplatforms_library_id | 102.100.100/456742 |
| bioplatforms_sample_id | 102.100.100/458253 |
| certainty | high, gravid |
| class | Amphibia |
| collection_date | 2023-10-04 |
| collection_method | Collected from wild by hand |
| collector | Tiffany Kosch | Melissa Hernandez Poveda | University of Melbourne | Ben Scheele | Australian National University |
| collector_sample_id | crsi_1 |
| common_name | Common Eastern Froglet |
| country | Australia |
| data_context | Reference genome |
| data_custodian | Tiffany Kosch |
| data_type | Illumina-transcriptomics |
| dataset_id | 102.100.100/351900 |
| date_of_transfer | 2024-01-16 |
| date_of_transfer_to_archive | 2024-01-16 |
| death_date | 2023-10-04 |
| description | RNA-seq |
| facility | AGRF |
| facility_project_code | CAGRF23091299 |
| facility_sample_id | 15370-2 |
| family | Myobatrachidae |
| file_type | fastq.gz |
| flowcell_id | 22H37WLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20240116_AusARG_AGRF_CAGRF23091299_22H37WLT3 |
| genotypic_sex | female |
| genus | Crinia |
| habitat | Alpine Sphagnum Bogs and Associated Fens Ecological Community |
| identified_by | Ben Scheele |
| insert_size_range | 180 bp |
| institution_name | University of Melbourne |
| library_construction_protocol | Illumina Stranded mRNA |
| library_id | 102.100.100/456742 |
| library_index_id_dual | UDP0074-F & UDP0074-R |
| library_index_seq_dual | TTCATAAGGT-TGTTAGAAGG |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 32.6 |
| library_pcr_cycles | 13 |
| library_prep_date | 2023-12-26 |
| library_prepared_by | LJ |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult |
| location_text | Snowy Flats, Namadgi National Park |
| material_conc_ng_ul | NA |
| material_extracted_by | AGRF |
| material_extraction_method | NA |
| material_extraction_type | RNA |
| metadata_revision_date | 2024-11-15 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx |
| method_of_determination | dissection |
| order | Anura |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | NA |
| project_aim | Reference genome |
| sample_custodian | Tiffany Kosch |
| sample_id | 102.100.100/458253 |
| sample_quality | fresh frozen |
| scientific_name | Crinia signifera |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP-SBS |
| sequencing_model | NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | NA |
| species | signifera |
| specimen_id | A4128 |
| specimen_id_description | ANWC |
| state_or_region | Australia Capital Territory |
| subspecies | NA |
| taxon_id | 326986 |
| taxonomic_group | frog |
| ticket | BPAOPS-1550 |
| tissue_number | crsi_1_ovaries |
| tissue_preservation | RNA_shield |
| tissue_type | ovaries |
| type_status | NA |
| voucher_or_tissue_number | A4128 |
| wild_captive | wild-caught |
| work_order | 13071 |