Eastern Three-lined Skink, None, Illumina-transcriptomics, Testes

Scincidae, Bassiana duperreyi, DDBD_141, skink, Project Lead: Arthur Georges

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:10:ausarg-consortium-members
Access Control Date 2020-08-14
Access Control Mode date
Sequence Data Type Illumina-transcriptomics
access_rights No restrictions
ala_specimen_url NA
analysis_software GenerateFASTQ
analysis_software_version GenerateFASTQ: 1.1.0.64
ancillary_notes NA
associated_media NA
ausarg_project Reference genome
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/illumina-fastq/BPAOPS-948/
bioplatforms_dataset_id 102.100.100/351721
bioplatforms_library_id 102.100.100/350725
bioplatforms_sample_id 102.100.100/349723
certainty Certain
class Reptilia
collection_date 2018-07-03
collection_method Hand
collector Duminda Dissanayake
collector_sample_id DDBD_141_Testes_A
common_name Eastern Three-lined Skink
country Australia
data_custodian Arthur Georges
data_type Illumina-transcriptomics
dataset_id 102.100.100/351721
date_of_transfer 2020-08-04
date_of_transfer_to_archive 2020-08-25
decimal_latitude_public -35.36165833
decimal_longitude_public 148.8034583
description RNA-seq
experimental_design Transcriptome in support of annotation
facility UNSW
facility_sample_id GEO8324A6
family Scincidae
flowcell_id HH2JJBGXG
flowcell_type NextSeq v2 Highoutput
folder_name 20200803_UNSW_AusARG_UNSW_HH2JJBGXG
genotypic_sex male
genus Bassiana
identified_by Duminda Dissanayake
insert_size_range 200_1000bp
institution_name University of Canberra
latitude -35.36165833
library_comments input amount 1ug
library_construction_protocol TruSeq Stranded mRNA
library_id 102.100.100/350725
library_index_id UDI0006
library_index_seq TGACAAGC-GAACATAC
library_location Ramaciotti Centre for Genomics_UNSW
library_ng_ul 4.1
library_pcr_cycles 12
library_prepared_by Ramaciotti Centre for Genomics_UNSW
library_status Sequenced
library_type RNA Seq
lifestage Adult
location_text Piccadilly Circus, Namadji National Park
longitude 148.8034583
material_conc_ng_ul NA
material_extracted_by Garvan
material_extraction_method NA
material_extraction_type RNA
metadata_revision_date 2024-11-15
metadata_revision_filename AusARG_Metadata_master_QCIF_20241115_FORDATAPORTAL.xlsx
method_of_determination Dissection
n_libraries_pooled 9
order Squamata
phenotypic_sex male
phylum Chordata
prior_genetics NA
project_aim Reference genome
sample_custodian Arthur Georges
sample_id 102.100.100/349723
sample_quality Good
scientific_name Bassiana duperreyi
sequencing_facility Ramaciotti
sequencing_platform NextSeq500
source_population Piccadilly Circus
species duperreyi
specimen_id DDBD_141
specimen_id_description UCanberra collection
state_or_region ACT
subspecies NA
taxon_id 316450
taxonomic_group skink
ticket BPAOPS-948
tissue_collection UC<Aus>
tissue_number DDBD_141_Testes_A
tissue_preservation Frozen
tissue_type Testes
type_status NA
voucher_or_tissue_number DDBD_141_Testes_A
wild_captive Wild
work_order 13002